Protein Info for mRNA_490 in Rhodosporidium toruloides IFO0880

Name: 8858
Annotation: SUPERFAMILY--SSF52058

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 489 transmembrane" amino acids 40 to 62 (23 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (489 amino acids)

>mRNA_490 SUPERFAMILY--SSF52058 (Rhodosporidium toruloides IFO0880)
MGLLDLLRAKRRKSRVSLGEKTAYVCFRLLGTSPTLPAEIVLYIFHLAFVECPASACTLA
LLCSETRDRVRTALYTAPTLRSTTQINAFIRTVKRNPRLARMVQRVRLDGCASRKSICKG
VAGGPDPQEVGRRNPLTTRLSTLLELCPNVVELCLVRTVVFSLLDFDNGHKVRHLTLSSC
VLSDRTTTSRYHPFFTVIPTLESLTIRNTQFDTSTAAHFLSPRTLPKLSILSLNGCNLVD
EPGSLNDLGPYEPVDLAPNLESLELLGPPSQREEENAVDPLDLVAKCPSLRNLVLPVSSV
SAHVLDNLPASHLTHLTVLPPAQGTADVFEPHLAAARALSTSFLALASSSASASASPAYT
PFRSRTPISASPSTPPTPLALTPFPSPGLASPLSSPFGTDSPLPLSQLLVLTLPQSWDLD
TPNSWKTNGEFAWAVGRIRRECERRGVQVRWVEERERSTRMQEWAGEKERLQEEMERVRR
DIERAQRGL