Protein Info for mRNA_498 in Rhodosporidium toruloides IFO0880

Name: 8866
Annotation: K07179 RIOK2 RIO kinase 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 PF09202: Rio2_N" amino acids 8 to 90 (83 residues), 104.8 bits, see alignment E=4.4e-34 PF01163: RIO1" amino acids 107 to 244 (138 residues), 100.2 bits, see alignment E=2.3e-32 amino acids 273 to 310 (38 residues), 38.3 bits, see alignment 2.3e-13 PF06293: Kdo" amino acids 148 to 249 (102 residues), 26.6 bits, see alignment E=7.3e-10

Best Hits

Predicted SEED Role

"serine/threonine protein kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (374 amino acids)

>mRNA_498 K07179 RIOK2 RIO kinase 2 (Rhodosporidium toruloides IFO0880)
MKLDATDLRYISADAFRVLSAVEQGSKNHELVPSALIAQIAGSRSGGVNKALGELAKKKL
VAKVQNAKYDGYRLTYGGYDFLACRTFAKRDTIYSVGNQIGTGKESDIYVVANEDDEQMV
MKIHRLGRMSFRAIKSKRDYLRKGQSASWMYMSRLAAIKEFAFMKVLHDHGFPVPRPIDQ
SRHCLIMELIDAFPLFCCLTQPPDLVRPSPGALYSALMDMIVRLARSGLIHGDFNEFNLL
IRDHRTEAEKARDDETPDERDERIEREGGDFPPVLIDFPQMVSTDHPDAEYYFNRDVECV
RIFFSRRFKYESSVYPKFTSVVRDGVREFDLDVEVAASGFKKEDRKVLEEVRRRPCPSLR
LPTGLTHPFRTVHG