Protein Info for mRNA_507 in Rhodosporidium toruloides IFO0880

Name: 8875
Annotation: K19347 SUN1_2 SUN domain-containing protein 1/2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1225 transmembrane" amino acids 593 to 613 (21 residues), see Phobius details PF07738: Sad1_UNC" amino acids 1039 to 1124 (86 residues), 61 bits, see alignment 6.4e-21 amino acids 1160 to 1215 (56 residues), 33.4 bits, see alignment 2.1e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1225 amino acids)

>mRNA_507 K19347 SUN1_2 SUN domain-containing protein 1/2 (Rhodosporidium toruloides IFO0880)
MSRPPNSRSSHGRSPSVEGEIRRASVHSLNLSYAYGAPASPRVGTSTSTRLQASPPRRVR
SSTGAVEEEDEGEQEDQAAGAGPADTGRAAEPAAVRYARLAQRKKDTGGNAYPPPPPVAY
GGLQNTSVNIANAFKAATSGLGGVVTGGRREDFPPLNGRGDNGVDEAEEADEDQEQRQPA
KAPASAGKKRKKHAPKDPTYRHQAGQTSSSEESEFDQRAKGKKRTKVHSEEDDLADDPRS
ANKPRRRSQKPADPSYNPTKDPSYHAGDTSTADSDNGAATKRRKSKGKGRASTGGRSALQ
EAIPRGIRDGEIWYGKKRKGKRGSRRSTAGAEGDEQEGDEEDEEEDDLEYEGQDLGGMDP
QDHPAGNDYLDDEADRTPPAASYFLRLRSPSPQANGGAPTSHQQAAASSSRTNGAGPVDP
AFAAFDRSLGHGNDSNSLSASFDDSVLRGSSYDYSEEERIVQALEAQKKRQFEEEQRRRQ
QAQPTPQHQRAAAAAPGTSGATPMPTTGAYPLTPGAAGSPVSALRKRRLPGPPSMLGAGT
PLGPIDDDEDDVARAERMGGEWGRKCGNALRPLVELVARLWRKTQDPLLHWGRIWKAIAA
TLLLLGIVTAILRSNRLTSSTSSSPSSFVAPSAPPDSFEGLVARLSDLESAMSRLSSASD
NDRQQSSDDREYVSRLSEQLESLEATLSTEQARAKAALQSLEKSGESRSLAAEKVAQDFK
GDIDSLQARIRSLTTEQQRDSADLRHLQTTVTAVSREVAALDQQIAKVAKDVAAATDVER
ITKIALDAIARKLPGKVAVRLDDSGRLEIDPAFWRVLKDAFVDKRAVERTVDAKIAALDG
SKRNGLFGSSKEAKGQAGPPSWDDFLAANEGALKAWVASDLSSRTGSDAFVSKQTFLDFL
RREIKLLKRDFEAKANENFEQMGQEILAKVAKQEDMRRKDASLASHLNPFARHHSAPTAD
GPVTIKSSDGQNVTAIISSLVDSALLRYSKDVLARPDYALYTAGGRVIRSLTSRTYEPYP
LSRSRSVLAWITGTSVPQGRSPVTALHPDRTPGSCWPFAGQHGQIGIQLSRRVVPTDITL
EHISPDVALDGDVSSAPKDFEVWGIVDGPQNVAKVTQFRLEEREAKRAARAAGQDPLDDL
DAIENEPTSMPPSANHILLAVGSFDPSAPSPVQSFPVTPSARRLGLPVQVVVVKVLSNHG
ESAYTCLYRIRVSGQTESQLLDASA