Protein Info for mRNA_523 in Rhodosporidium toruloides IFO0880

Name: 8891
Annotation: K11644 SIN3A paired amphipathic helix protein Sin3a

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1487 PF02671: PAH" amino acids 93 to 137 (45 residues), 59.7 bits, see alignment (E = 3.7e-20) amino acids 385 to 429 (45 residues), 61.2 bits, see alignment (E = 1.2e-20) PF08295: Sin3_corepress" amino acids 683 to 777 (95 residues), 110.5 bits, see alignment 5.5e-36 PF16879: Sin3a_C" amino acids 1132 to 1396 (265 residues), 258.4 bits, see alignment E=1.7e-80

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1487 amino acids)

>mRNA_523 K11644 SIN3A paired amphipathic helix protein Sin3a (Rhodosporidium toruloides IFO0880)
MAQPPQGQPAPPQPAPPAHHAPPTHASSQPAQQRQPAFQGQGQRAQQPGQSGQQPPPPAQ
AQQQQQAAFRPLNVRDALHYLDRVKQQFANEYEVYDQFLTIMKDFKTQNIDTPGVIDRVS
TLFRDHPSLIQGFNTFLPPGYRIECHVTPSTDSGAPGSAGGNTNTITVTTPMGVTTRTQN
VSASTPLSSGPPPSQQPAASTSAPSQAAQAPATSKPAGSNLPQARLPPLPPGQTAQAARA
ISPPAPIPPFGGNRTTWNAPTSTQQQQAKTGQKVGGVAGPASGSFVAHQPAASTRTGPAA
QAPKPAVGYAAHDVKPNVASEPSVPPAVPQQPHPQAVVAPAPAAPLPAQIQQAAQAVRDP
PQVMEFNHAINYVNKIKNRFAKEPETYKTFLEILQTYQKDQRPIQEVYAQVTILFAKAPD
LLEEFKAFLPDTSAPESAAGASPAGPAGKKKDVGGKAGPAMGGKAGAAAPAPGEKKKRAA
PGTSEKAKAKRAKMAHLQQQQQQQAASIESPPLGHGPSVPVAKAQQQHHADLAAQHSPVS
PYGPPPSAAQPHAHPYGAPPPGFPGAPRMQSAYDAYLAQHQNPPLVQPEEFTFFERVKKH
IDDREAYTEFLKLLNLYTQEIIDLKTLLSKSLLFIGNDDTLVAQFKDLVGWDPVKDGRVD
GEDWIIDNEPVLERPRVELHLLKSFGPSYRKLPDSEIDLACSGRGPLEWSVLNDEWVAFA
TWASEGSGAHRKNPYEEALYNSEQERHWYSFHLESMARTVSHFETIAARLALMSSDERAN
FKLGGEEGGLGGTAPSVYERIVRKIYGKDHGWEILQALEDNPAVAVPIVLARLKQKDEEW
KRAEREWNKVWREVDAKNFYRALDHQGIPFKAIDKKTTTTSKSLTTEIETLRRDKQQKRF
DIPSHQPPRHPSQPTGAITYPTDSISPSLPLPLRPLHQFEMHMSDRSVLFDVLKLTFSYL
DREQSGFSTPERARLEAFLRLFVPLLWGISIGEMEANLGQSQHDDADVEEDEAETEAGDA
TTETEGETGAEGSEAGSSSAGSGRKGSSMRRGGAADLRKRLLMHAAATAGRSIPSGANGK
SASRQGSPASDESELGRLADATWIQLVETKENGEPVSPPSPDEVLDPRRYNFFANSTFYC
LVRVLHAMYHRLLAFKQLAADLASAHRDKRLNPIGVDLGLSAPVPVVDTGDNPPEHYYEH
MLELAEKLFDGEIDQQTYEEQLRYMAGVRAYPLFTLDKLISTAIKHIHTINSENRCQDIV
TLLEKDRARQTTTPRQQIAYRMEVEQVLGTDEHIYRIEWMPASQALTIQLLGKEDLTMDD
AYESEAKMHQSWLASFALTTPSEGIGAQVKAPLLKRNRVLSANEDPQEFDLLPGLEAKVS
ESGYKLFFVANTEDFLRRRRPPSGDDERDEYGSLSKRRSERFNRWLEEQLHPESAAQDEG
QEKEAKDGRGPEAPSAAALAATDGSASAAGAGGVEAGGDVQMADEQQ