Protein Info for mRNA_548 in Rhodosporidium toruloides IFO0880

Name: 8916
Annotation: K15084 SLC25A16, GDA, LEU5 solute carrier family 25 (mitochondrial carrier protein), member 16

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 transmembrane" amino acids 60 to 81 (22 residues), see Phobius details amino acids 167 to 184 (18 residues), see Phobius details amino acids 256 to 278 (23 residues), see Phobius details amino acids 297 to 318 (22 residues), see Phobius details amino acids 357 to 381 (25 residues), see Phobius details PF00153: Mito_carr" amino acids 66 to 155 (90 residues), 73.4 bits, see alignment E=5.8e-25 amino acids 164 to 215 (52 residues), 31.4 bits, see alignment 7.2e-12 amino acids 297 to 387 (91 residues), 62.3 bits, see alignment E=1.7e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (407 amino acids)

>mRNA_548 K15084 SLC25A16, GDA, LEU5 solute carrier family 25 (mitochondrial carrier protein), member 16 (Rhodosporidium toruloides IFO0880)
MHSPAASTSSVTLDHSPTPTPSPSAASPSAGPPSPANSPAPPASSHDHAKRKRTARDKDA
LRYALTSGFAGGIAGCVAKTSVAPLDRVKILFQTHSPDYQKYAGTWTGVFKASKAIYAET
GVRGLLQGHSATLIRIFPYAAIKFMAYDELHRVLMPTPEAETSGRRFLAGSLAGIITTGF
TYPLELIRVRLAFESHHSPKDRASLLRTIRAIYQNPPPPASSSSSAPQPTPSPSPVSASS
AASASSRPTIAHFYRGVWPTLVGIIPYAGTSFLMWGFLKTDLFPSIFSPTFRRQNRALLD
LLAGGVAGAIGQTTAYPLDIVRRRMQVGPVLHADGRGRAGFWETAKGVHRQGGWRGFFVG
LSIGYLKVVPMNAVSFATWVAMKRLLGMEETPGGGKSEGKEQEGEGR