Protein Info for mRNA_555 in Rhodosporidium toruloides IFO0880

Name: 8923
Annotation: K03115 CSNK2B casein kinase II subunit beta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 249 PF01214: CK_II_beta" amino acids 16 to 223 (208 residues), 268 bits, see alignment E=2.1e-84

Best Hits

KEGG orthology group: K03115, casein kinase II subunit beta (inferred from 64% identity to cne:CNE02360)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (249 amino acids)

>mRNA_555 K03115 CSNK2B casein kinase II subunit beta (Rhodosporidium toruloides IFO0880)
MADDLSISSSPSYANSWISWFLASKGNEYFCEVDEEYIQDRFNLTGLNAEVSGYSAALDL
ILDTAADEDLNDEQREELESSARHLYGLIHARYVITSRGLSKMIEKYKKGDFGRCPRVLC
YGQSLLPLGLSDIAYQKAVKLYCPRCEDLYSPKSSRHGSIDGAYFGSTFAHMLFMVYPGM
IPSKSVPGAGQGAGGQAGLSGGGLGAQAAAKVERIRPRIFGFQVHEHAKLLRWQEKIRDQ
CVHVLSSIL