Protein Info for mRNA_557 in Rhodosporidium toruloides IFO0880

Name: 8925
Annotation: HMMPfam-Ras association (RalGDS/AF-6) domain-PF00788,ProSiteProfiles-Ras-associating (RA) domain profile.-PS50200,SMART-Ras association (RalGDS/AF-6) domain-SM00314,SUPERFAMILY--SSF54236

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1414 PF00788: RA" amino acids 586 to 667 (82 residues), 43.2 bits, see alignment 2.7e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1414 amino acids)

>mRNA_557 HMMPfam-Ras association (RalGDS/AF-6) domain-PF00788,ProSiteProfiles-Ras-associating (RA) domain profile.-PS50200,SMART-Ras association (RalGDS/AF-6) domain-SM00314,SUPERFAMILY--SSF54236 (Rhodosporidium toruloides IFO0880)
MTDEEGEEDGEGYDEGMDVEGEEGDELDRHPAEGFEEDEEEDGLRAGAREESEFSDDHEH
HHGSAAGRQEHEGVFADGEAEGELSDGEADDEDDTAEARRGRSPYDEALRPSSSASAQGT
DEAAKRQHWERESAAALQAQEQAAQAEAQWKRERDAQGQQQRALSPRVDSIGAAQDRRPL
SPADANLQQHSQRLAPQDGLSPRTRQTDNVGLSPTQPGTSSLASSTRSSRFDENDFLDSE
VPTKKLTATPPIARDENASRFDDNLGRSPPSNHPPQLQPGGQPPRQAPQQPLRVRGVDLV
DPRDPRYNRMLQPTKQAGEDLIYERVVADAQRQQRMQAQVDGGARNGSLDYSVGNEGDAS
FGSVDTHTSSISEGVGASGSKKGQQAPTTTEKKRKSVGGILGLFRKKDKNKKGDSKDENA
VRSSEDSGVLSPTSTAFRRSGSISPVAAQQAPNERTSSRTGAPTAESMFSTDAALRQQEL
EAKQALYHQYGVSRAPGDITNTMTPRGQPGGLSVSDAQSQSRLSVEGTGSKRNSLQLLSH
PASVVGPNGSLGSPSSLGPAGQRMRPGSLIGSPSIPGLEVPLLSVMRVFAGANIDSDATF
KTVLLNQSTTAADLVKQAMQRFRLTGADLTREDFYLTVKELGGDERPLHDIENPLEIFEE
LSERAGDESAFPPNVRRSSVGSINSISSNLSLNPAIARSGLNDWSDDSAVKFYLHRRGNP
DSPLVGQTPLDGAEDSFAQQSSEHDTASDHTATPQLGVPQSTPSYRFAVRLLIHPGDLPE
NVVFDPASNAIIPKAVLAERQQRNSGFSEPQSPNSLSSSQQPREKIIFFPRNANVSEVIE
TALDRFGIVDGVVDGGDEVEDRVSRRRSVTRVKYSLAVLHEGKESFLNASSKLLDAYTAP
PLFKAYDRSSKEFRRRSADTSLILGSSADVQTTDPVFVIRRSPLRSTAGRGGVLPQTIDE
LEELQQRRQAEEDEEQEVLRGSPNPATGPRSHRDIIAAQRAASRANQQAILSAQKNGEQG
YDIAIRDQGTIRSARDVDNDEVRYSYVDESGAETDISRIVENEWQHKARAGPPPEPVEVH
RPTSSFSRTTSAATTTDADSFRTAPSSMPDGAMATDNESLADDEQQAIEALRSTNLDIDS
PVSAFAPEVSPSVASFKTAMAVSPAAAHEDVLKDALGPRPTTSPALDENLQERLERVLAR
VKEEKARRAASPTGANVRPRSFMSSSTTATPTGRFSPVNVGVRSASAMGGRRSPFGDGMR
DAPSINQLISQSTPPASTLPRNGDSAHAKKGSIASISSTASTTTDQLSTPVTVISSGFTP
ASSANSNHRPQIVYRDDFGYDTLLAIVEADSHSPARQTEQVSPEDAVLHSLFGRGLDSVP
DLHPEVRSAYEGPAKALDDLDARLDSLLASLVRA