Protein Info for mRNA_562 in Rhodosporidium toruloides IFO0880

Name: 8930
Annotation: HMMPfam-HPC2 and ubinuclein domain-PF08729

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 740 PF08729: HUN" amino acids 342 to 382 (41 residues), 42.3 bits, see alignment 6.2e-15 PF14075: UBN_AB" amino acids 464 to 721 (258 residues), 94.1 bits, see alignment E=1.1e-30

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (740 amino acids)

>mRNA_562 HMMPfam-HPC2 and ubinuclein domain-PF08729 (Rhodosporidium toruloides IFO0880)
MPLPETHPDGDPFAERDAEAARSSWLGRLESKALAENAADSSSVASSPAPSNKKNGFAPP
KPALPKRESSGGTGKARQSLGFDSKGNEILVVDSDSEDDEDDEGGGAAAAADEDEASGSD
EGEGSGSDEGEEGSDAGEGDETKVGATENEEEEEDSEEDDSDDDSSSTTSERREGGEDVE
MADGGAAKAKSPKKAREGEDAGGDAEMKDGEGKEGAEGEPKEKKKRRRRQQRTPTPPPLA
PKEPRPTIRLEIALPPRKDDVAPEFNIVQLAKDAGFIKDEPKKEGGDDDEGSESDGQGGR
RKKGKEKADDEGTPGAGEAGEAGGNGPPKKRRKRGPNVVLGRFGGYDTNDPFVDDSEVAL
YEPRFYARPKREGYFVCAGPVEVAPRRGRVKGSKNKPKLDENGNPVPVATTTRRKSTHKV
VVGADGKPVHDANASAGPSESGASVPPFGAAAPAPKKVRKKGEFSPELQEDLDMLKRESK
KEPWIIKNKFPQHLKELLTSVAYHALDLEEYDDEFFAEMPKIFPYNLFTMKKLIKREVFH
KRIADMTTQQDELLSVIQDGIDQSYDAQRLEFERKRAEWEKQQAEGGGSTASNLLRRTPE
PTPGTPGFGGPPAITTPLIAAAEGTEGSPAPGKDDDDEKGQAEPKWRFRFNEQMREALYK
VSELEDKKSELISEKQSLEKATTREVNREKPHSVKNARKQLYQRIINLWPQDMMTSNQIS
REISNYKLKLKRVGDLPADA