Protein Info for mRNA_567 in Rhodosporidium toruloides IFO0880

Name: 8935
Annotation: ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 656 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 405 to 427 (23 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (656 amino acids)

>mRNA_567 ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257 (Rhodosporidium toruloides IFO0880)
MPVGARVLAGLPSFAACARLSPSPAHSSLSPGRRNRLDKLNHERPRRECSAMYPEPHERD
WSQAHHTLRTNSPLHRQFNFVLAEFRETFCEIARAQHPRLTRTNTESTSEQRLASKRARA
EAVRAAEAAFSAWYEPLQRATMETHAWTKLFWPSFRHGGDDNRKKAIAELDGWYKYVKAN
PNTYPSPASLPPLTDSEAFPIIAAALSSAAKQDKQVTSTEEEDRYPSQPSQHSLAASHRR
ISHRQQAIYGISQRSFARAGCTVIESNAPSSGVSFILPPQVAQLEPNLLRPQLGGQSLPL
PPRADLEEPLSNDAGHCKRPIPFASVVRSVWELGDMVGEYELMRSGRRVKAMGTIEAGRR
RCRRSTLAVLSSSSLPPASYCYCLARCTVRLSHSACGQKIPTQRWLSSLVFLLASLPSLP
PSSRLLLLRGLAKPPKSPPAPTRACAYLPLFFHSLPFPQLLHGSTMPAPHYRDWSQATVE
LRGGHGHNPARLRFEAIMDEMRTWFRARATTLPKPMKKGVSRKALADDEFFAWNKPFFHD
VGSETEWKGLFVTHVGGDKRAKAVAELDGWFQYVKEHEEEYPSPASLPRLTDHKAFPIIA
AALASIGIIHHEPIMLTEEDRYLQQQHSLAVSHRRLSHRQQAIYGISQRSFARAGF