Protein Info for mRNA_588 in Rhodosporidium toruloides IFO0880

Name: 8956
Annotation: K12609 CAF120 CCR4-NOT transcriptional complex subunit CAF120

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 644 transmembrane" amino acids 29 to 52 (24 residues), see Phobius details PF00169: PH" amino acids 307 to 418 (112 residues), 26.6 bits, see alignment E=3.6e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (644 amino acids)

>mRNA_588 K12609 CAF120 CCR4-NOT transcriptional complex subunit CAF120 (Rhodosporidium toruloides IFO0880)
MDGVVAVYIPHLAVPLVATSTRIVLVHRLALLFFLRFVAALACFAACDALCMTKLHRRST
VQRNSTVLPPLSPSSTREPTSPVLLEDNPQDPRDYAWESYTPGQYRQSPNSSFLAESPAF
PSSPLFPSSSLPPMSGQQQGQHGGYGQQQQYQYQQGDYAGSQGPAYGRPPQPNQGFERAM
PHPHRQSSYGLPPPINTQDPRVRNGSQQGSSGSASPIGPPPGRPYPSSGPPSASRQSPVP
TVSTQSHQVREGSSITPQTTRPTSQLPSHGSSRSLASQAAPQTIAGEPLHDLDRAVALLK
SSKFYAEGFLMKKVEAGPDGKAPTGADGQWAKWFVQLSGTIMSTWNAADMEDAACNNRTV
PPQYLNLQDAFVHPFPPHGRGSKSPTQFQFALNSAGANRILFCAPSLQSLTMWINAIRLS
TWERSRCNEIWTGSLLGLREPKPLGWQGFDAGLPAAGGGKATPGRFEGWLKVRLPGDTEW
RRVWAVLFRGSSVPTRSSIVGGPAAVQAEEKKSRRSSLLSFGGKKDKREEVVIEDLPGEG
AISTFAFFDRKPGKKELPICIVQHVFYIAAIFPESEALMEGSTLFKVEGTFLNPSDSYLA
SGWGVGGRAEKQGFALLMLEEGNYLDMLHWVVGLADAFKVRGRS