Protein Info for mRNA_589 in Rhodosporidium toruloides IFO0880

Name: 8957
Annotation: KOG1763 Uncharacterized conserved protein, contains CCCH-type Zn-finger

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 361 PF00642: zf-CCCH" amino acids 94 to 118 (25 residues), 25.5 bits, see alignment (E = 9.5e-10) PF16543: DFRP_C" amino acids 224 to 315 (92 residues), 94.6 bits, see alignment E=4.2e-31

Best Hits

Swiss-Prot: 41% identical to ZC3HF_DICDI: Zinc finger CCCH domain-containing protein 15 homolog (DDB_G0292410) from Dictyostelium discoideum

KEGG orthology group: None (inferred from 59% identity to scm:SCHCODRAFT_83445)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (361 amino acids)

>mRNA_589 KOG1763 Uncharacterized conserved protein, contains CCCH-type Zn-finger (Rhodosporidium toruloides IFO0880)
MPPKKQDGKPAKVKDDKTFGMKNKNKSAKVQKQVQIINQQEAQRGKNKEALEKAKEKERI
AEKKRAEQAKKELEAQLYGGLDIVQPKVPFGVDPKSVLCAFHKAGRCQKGAKCKFSHDLN
QDRKGAKANLYEDARDANKKDPTKDEDMSTWTEEQLRDAVSKKGNPKATTDIVCKHFLEA
IEKQIYGWFWECPAGEKCIYRHALPPGFVLKSQKKKDESEDKSLSIEEFLEVERHKLDQK
KLTPITKESFAEWKKNRVSKKEAEEQALQSAKSATAAAGKLTGLSGRDLFTYNSELLGAD
EDEDEDEEWDLEQLRFKTEAERREKEEERIRALGGDVATMSLAEPSGESRPAEEENGAEA
S