Protein Info for mRNA_591 in Rhodosporidium toruloides IFO0880
Name: 8959
Annotation: K01915 glnA, GLUL glutamine synthetase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K01915, glutamine synthetase [EC: 6.3.1.2] (inferred from 60% identity to ppl:POSPLDRAFT_91180)Predicted SEED Role
"glutamine synthetase family protein" in subsystem Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
MetaCyc Pathways
- ammonia assimilation cycle III (3/3 steps found)
- L-glutamine biosynthesis I (1/1 steps found)
- ammonia assimilation cycle I (1/2 steps found)
- ammonia assimilation cycle II (1/2 steps found)
- L-aspartate degradation II (aerobic) (1/3 steps found)
- L-aspartate degradation II (anaerobic) (1/3 steps found)
- superpathway of ammonia assimilation (plants) (1/3 steps found)
- L-glutamate and L-glutamine biosynthesis (3/6 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 6.3.1.2
Use Curated BLAST to search for 6.3.1.2
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (478 amino acids)
>mRNA_591 K01915 glnA, GLUL glutamine synthetase (Rhodosporidium toruloides IFO0880) MASSNITLEDLPKLLADDDKVQVAGVDVDGVLRGKIMMKDKFLSAAKSGFGFCGVTFGWD MHDKTYERELGISNLQNGYKDLLACMDLDSYRRTPGTPSLPFFLITFHDPDTQEGLYACP RATLKKVVGELEKEGYQAMAGAEYEYFQFKETPKSLHEKDFHRLEPLTDGMHGYSLLRPE VNGDYFHAVYDDCAKFGIPIEGHHTETGPGVFESALAYQPVLRMADNALLFKYTAKVTGL RFGIMPTFMAKPYGDQPGCSGHIHISLRDKDGRNVFAVKEEEVEKGRVGAQYEDTKRISQ EAEWFLAGVLEGLPDIMPCLVPTVNGYKRLVESYWAPTTVSYAYENRVASVRIISPPMGD TKSTRLEVRVPGADMNPHLAFSAVLALGLRGIRNKSTLPCPPISTANLSESDATTLSFER LPNSLEKAAERMARKGSLAREVLGDQFVDHFTATRLNEWAIYARAVTDWELKRYFELA