Protein Info for mRNA_593 in Rhodosporidium toruloides IFO0880

Name: 8961
Annotation: K18469 TBC1D5 TBC1 domain family member 5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 829 PF00566: RabGAP-TBC" amino acids 187 to 290 (104 residues), 61.5 bits, see alignment E=5e-21 amino acids 321 to 401 (81 residues), 49.2 bits, see alignment E=2.8e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (829 amino acids)

>mRNA_593 K18469 TBC1D5 TBC1 domain family member 5 (Rhodosporidium toruloides IFO0880)
MTADSSAGGLQRTRPTDEELLQRWQGYMGDPMLSLAGLKQEAVEGKVEERGLRSLTWRVR
LTTIHRIQMKLTYLRRQYFFDLLPAPTPLPSTPPSSSSSALPTYSLLLSRSRTSYDELRE
RYLRAPDGRWVADGATGEADGVATVPSNKANGAAGGHLRKVEVKANNPLGLDEENPWQAW
FEDLDLRKMIRQDVQRTFPEVDYFRQAATQDRLTDILFIWCKLSPEIGYRQGMHELLAPL
LLHVDFDSLPSTGAEDSLACVVLSRAHVEHDTWALFSSLMRSAKTFYDHTPSVPVSPKTS
AAFGATAASAQATHLVQPIVATANQLQSLLKSLDSSLYTAFVRLQVEPQIYAIRWLRLLF
SREFPFNDSLLLWDGLFARDPTLQLTTHIALAMLLRIRDSLIAASREGYGEFLQILLRYP
ACPDGLFHTSTLVQQALYLRDNLSPSAASYIRQQNRDLGLAVGEAVPEDDSEESLVGRAN
GAPGHRRSQTAGGVQGLGFLSESGLGDFAKGVYGRAEALGINKALRGTFDEIRRGVAEAQ
AQAEERRRRQLAGFSQIPTRPPWDPQRSPPPPPVATKNAFSDLATMRASASAMSQAVDLC
ITAFEATLVVPSPAASPRPGKVSNDAGNQQRVAKEVGAPQMMALTALRHVRDVLGGQAHA
FDPSVLEPLRQTLQPQQSVSASTSEPFKVEGNVVSPEADKTKSVAAPAPDADAPPSLASQ
SASKMQSTASPPPPLAPAASSPALLLSDRTDKPLPSLSRTPHARTSSIAWRGLSAYPPRP
AETPASPTAPSPSPSAPPRPSSPTSQTPSPPSPSTRKTGAVMSDPLGVL