Protein Info for mRNA_594 in Rhodosporidium toruloides IFO0880

Name: 8962
Annotation: K16261 YAT yeast amino acid transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 560 transmembrane" amino acids 62 to 82 (21 residues), see Phobius details amino acids 88 to 108 (21 residues), see Phobius details amino acids 141 to 162 (22 residues), see Phobius details amino acids 168 to 187 (20 residues), see Phobius details amino acids 199 to 220 (22 residues), see Phobius details amino acids 251 to 271 (21 residues), see Phobius details amino acids 291 to 310 (20 residues), see Phobius details amino acids 337 to 356 (20 residues), see Phobius details amino acids 388 to 406 (19 residues), see Phobius details amino acids 419 to 442 (24 residues), see Phobius details amino acids 463 to 483 (21 residues), see Phobius details amino acids 494 to 511 (18 residues), see Phobius details TIGR00913: amino acid permease (yeast)" amino acids 53 to 528 (476 residues), 595 bits, see alignment E=5.4e-183 PF00324: AA_permease" amino acids 59 to 521 (463 residues), 461 bits, see alignment E=4.4e-142 PF13520: AA_permease_2" amino acids 61 to 499 (439 residues), 152.5 bits, see alignment E=1.7e-48

Best Hits

Swiss-Prot: 42% identical to PUTX_EMENI: Proline-specific permease (prnB) from Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)

KEGG orthology group: K03293, amino acid transporter, AAT family (inferred from 61% identity to cne:CNM00800)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (560 amino acids)

>mRNA_594 K16261 YAT yeast amino acid transporter (Rhodosporidium toruloides IFO0880)
MATSRDHLADVELGDIKGGSPTLNRTNSLSKHDGNGVVLRGLDGDSPDGSVHRNLKARHL
QMIALGGTIGTGLFVGAGGALATGGPLGIWLGYTIMGFTVGTMMVALGEMTTLYPVSGAF
THYTARFVDPAAGFALGWNYWYSYAITLPTEVTAAALVIQYWRDDINVAVWITIFLVVIC
CFNFLGVRAYGEAEFWFSLMKIITILGLILLGIIITAGGVPGTDPIGFRFWRNPGPFQQE
NGIPGTKGRFLAFWTVLVQAAFSYLGTEIVALTAGEAENPRRNVPKAIRRVFYRILFFYV
IGTFVMGLIVSPNDPNLTNADGVNASPWVIAIKNAGIKGLPSVINTVVLLSAFSAGNSDL
YASSRTLYGLACDGKAPAIFRRCTKNGLPIYCLILTALVGLLAYMNVSTGSTTAFNYLSN
LSSITGVITWLCICVSYIRFYHGAKAHGLDRNDFPYKAPLQPWASYWGAFFFFIVIIFNG
YTIFLDGNWSTADFIVAYVTCWVFIVLYVFWKLFKRTKFVRIENMDFDTGRRELDQIAED
EAARYKAPTTWYGRLWDAIM