Protein Info for mRNA_602 in Rhodosporidium toruloides IFO0880

Name: 8970
Annotation: K14642 YND1 golgi apyrase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 927 transmembrane" amino acids 543 to 561 (19 residues), see Phobius details PF01150: GDA1_CD39" amino acids 10 to 502 (493 residues), 355.2 bits, see alignment E=2.3e-110

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (927 amino acids)

>mRNA_602 K14642 YND1 golgi apyrase (Rhodosporidium toruloides IFO0880)
MPPRPPQWSQGRQYGVVIDAGSSGSRIQVYSWVDPEIAKHDRKAKGQSVDVLSKVEKGVE
EGDGWHLKVEPGISTFGSNPAGVPDYLRPLIEFAASVIPADKLPSTPIYLLATAGMRLLP
PEQQSAVLSSTCDYLRTFPFHLPDCGEQIRIISGEEEGLYGWVAVNYLMDGFDKHEHAAA
GERRKHSSTYGFLDMGGASTQIAFEPSEAEQIKHADNLVEVKLRLLSGKDVRHPVFVTTW
LGFGTNQARNRYVDQAIQKHLRNTDEADLPGDAEGLGSERPVVLVDDPCLPKSLMLSEAR
HAGYTTRGTGDFAQCLKRQASLLNKEVDCPDEPCLFNGVHVPPIDFSVNHFIGISEYWYS
TQDVWGAALNGNGVYDYVEFEKHAIEYCGREWDDIMRDYKEGGGSWKTNVELSRLEMQCF
KAAWIINVLHEGIGIPRIIDRGGQGDGKNQAEKGISKAIDKNLLDEPPSFQSMNEVNDVA
ISWTLGKMVLEVSKGTTELPVSSPRPSTYANSYGAFRMGWTGHIPSWRGDVRTTIAAVKD
SSALPFFGIFVLLLAFWLFGLSPGAARRRKSFCGPLGRSSPRRSEFSLLSQDDSAISSGD
SSGSRTPPRGGRRKNGSTVTRVLSPFQHAAIRLSSFIRSLTRQSSLSRSPSASILPMSRV
SNPSGGEIFRPRPIRSSKSTPFLRSATIAANYSSSTGHWNDMPAMNHPSDRIRPASAAQQ
QDPNAGAPFQRSTSGSALASYGPRTSSPPPMAVVIPPSPNSRPTTPASARPVLTKLTPRS
SASREASTDDFRHVASSSGIATPSPLSAGPHSASALSNAVWDSLATGGFSRERDSASPTP
GVGAAQALAGAKLRTSKSANSSQVNLAGPGGYFAHAGGSTAGGGNGTGSARRQGGPAFSL
TVQPPSANASSTSLGGQSAVSTPGTGE