Protein Info for mRNA_604 in Rhodosporidium toruloides IFO0880

Name: 8972
Annotation: K17871 ndh1 NADH-ubiquinone reductase (non-electrogenic)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF07992: Pyr_redox_2
  • amino acids 146 to 476 (331 residues), 187.5 bits, E=3.4e-59
• PF00070: Pyr_redox
  • amino acids 311 to 392 (82 residues), 36.6 bits, E=5.7e-13

Best Hits

KEGG orthology group: K03885, NADH dehydrogenase [EC: 1.6.99.3] (inferred from 59% identity to lbc:LACBIDRAFT_192207)

Predicted SEED Role

"NADH dehydrogenase (EC 1.6.99.3)" in subsystem Carboxysome or Respiratory dehydrogenases 1 (EC 1.6.99.3)

MetaCyc Pathways

• aerobic respiration I (cytochrome c) (3/4 steps found)
• aerobic respiration III (alternative oxidase pathway) (2/3 steps found)
• NADH to cytochrome bd oxidase electron transfer I (1/2 steps found)
• NADH to cytochrome bo oxidase electron transfer I (1/2 steps found)
• Fe(II) oxidation (2/6 steps found)
• NAD(P)/NADPH interconversion (2/6 steps found)

KEGG Metabolic Maps

• Oxidative phosphorylation

Isozymes

Compare fitness of predicted isozymes for: 1.6.99.3

Use Curated BLAST to search for 1.6.99.3

Protein Sequence (597 amino acids)

>mRNA_604 K17871 ndh1 NADH-ubiquinone reductase (non-electrogenic) (Rhodosporidium toruloides IFO0880)
MLAAMPFQRVLASQRTFITAVSAAASPAGARASRRAFALAATQPRRADVASATATSNPPP
SSQLSATPASSVSATTSNAPPKAASSSTSSGSSAGSQPPKKPKNRIRTFARTVLVTILAG
GGYVIWRSYEQRHPGEQLPHDPKLPTVVVLGNGWASTAFLKELDNSGYNVVVISPRNYFL
FTPLLPSVTVGTLSARSILEPTRFLTRHLKRKTEVYEGEVYEVDPEKKTVRFVDNSEIKG
EVDGTEISYDYLVYAVGAENQTFGIKGVKENACFLKEVWDAEKIRTRIVDCIEAANFSGQ
TQEEIDRLLSFVVVGGGPTGVEYAGELHDFLMEDLGNWYPDLADRIKITLIEALPNVLPM
FSKQLIDYTMSTFQENKINVQTKTMVKEVQEKKLIAQNEKKELVEYPYGLLVWATGNTAR
QVTKDLMNRLSSTQNSRRGLLVDEHLRLLGSDGIFALGDCTATNYAPTAQVASQQGRYLA
RVFSKLHKKELLLKELEQAKQVGAEPAKLDSLANAVIRASNIAPFHYSHQGSLAYIGSDK
AIADLPVFQGNLAAAGLATYYFWRSAYISQLFSLRNRLLVGTDWLKTKVLGRDVSRA