Protein Info for mRNA_628 in Rhodosporidium toruloides IFO0880

Name: 8996
Annotation: K17894 GATA2 GATA-binding protein 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 847 PF00320: GATA" amino acids 532 to 565 (34 residues), 56 bits, see alignment (E = 1.2e-19) amino acids 597 to 630 (34 residues), 42 bits, see alignment (E = 2.8e-15)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (847 amino acids)

>mRNA_628 K17894 GATA2 GATA-binding protein 2 (Rhodosporidium toruloides IFO0880)
MRPIVVRLPPSNFDPLAATSAPGDEDLARLRDTWNAWNGKARKLLDQGSRIENLWWRRWH
MDRRHGLVQHASPSLNSPHPDLYGLHASVEAHERRKATEDLETFLRTTLQQAQPTSHASL
PPQPPTFGVLSSSSAPKPNGVVTSQPSPNTQQPAIHAPQPRLPYNPSPDWTFSPLPAVSQ
PNQSRIIATPSWTAVIPESTDQAQSSSLQPPNLPAQVSQPSSATMPPPPAPFGLNNFYHP
PQPVLGDPAAAAAAAAAQAGAYPFTHPAIPPPIPSPSFALPPTATLFSDLPSALSSAPPS
GAPPAFFSSYGMYQPVIAPYPRFLTPSPEPSVLGELELDLGPATGEFSSASASVSAGGDD
GLDQVWRDLEGRSGDGPNGSSDGLLTQVKKDPFEGMTFAHLRSRANSLEAVDRDAAVKYH
NPYANGGDQIADAVRQVEEAALLAANGGGVGAKGKKGKRKADAVGGGGKKTKAAMGEGDF
DGFGVPTASTSTAPIKAGGKKNRNPHSTQLPGNGQRRLIKEEAGDGHDGPVCSHCGSITT
PLWRRGPDDELLCNACGLYLKLHSKPRPKTFGKSNASKRSSNGAAAQAAASGVPPSCSNC
GATSTPMWRKDQEGRLCCNACSLYYKLHKVNRPASLAQKRQAAAAAKANLAASVAAVAKT
GGGGSPSDGYNSGAGSLASSHLPTPAASTEVTPASTTGTPASAPPQTPMPPSFLSPNPGE
QATAPPPPQQLPPIPPAPPPHLMHHPPIWPPHPFAPPAYLPPGMMPPLPPQPGQQKFTLP
PAMPPQALPGSPFAQTAWGALAYGIVSAAAAEEAGVGVPGQAGPDGMPNVSPAQPPPPQQ
NGSNGAG