Protein Info for mRNA_633 in Rhodosporidium toruloides IFO0880

Name: 9001
Annotation: K14575 AFG2, DRG1, SPATA5 AAA family ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 841 PF00004: AAA" amino acids 320 to 471 (152 residues), 139.4 bits, see alignment E=5.4e-44 amino acids 612 to 743 (132 residues), 144.5 bits, see alignment E=1.4e-45 PF05496: RuvB_N" amino acids 320 to 394 (75 residues), 23.1 bits, see alignment E=3e-08 PF07728: AAA_5" amino acids 320 to 460 (141 residues), 29.5 bits, see alignment E=3.8e-10 PF17862: AAA_lid_3" amino acids 497 to 528 (32 residues), 34.5 bits, see alignment (E = 8.1e-12) amino acids 766 to 810 (45 residues), 46.1 bits, see alignment 1.9e-15

Best Hits

Predicted SEED Role

"Cell division protein FtsH (EC 3.4.24.-)" in subsystem Bacterial Cell Division (EC 3.4.24.-)

Isozymes

Compare fitness of predicted isozymes for: 3.4.24.-

Use Curated BLAST to search for 3.4.24.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (841 amino acids)

>mRNA_633 K14575 AFG2, DRG1, SPATA5 AAA family ATPase (Rhodosporidium toruloides IFO0880)
MAAPSAGQTGPETALQKLARRPFTVSLLSPAASPSSTSSAAPLHSRHLKRIHLAPEILKA
VKICAGDALVIRKMESQANGLEQGMKQLELDESDTISAAGLRGAGFAVGIAWPNFTMSGT
SVSVSPLLLANAGLSIGDTVSVSTIGTSGVEVLEADKVTLIYDPKGKPGRDSFFEAYVKE
VLVDIKFVAQHHFVEVTYNGILRRLLVLSANGNVVSPPDAAPPSSDSPAREQVFVISRTT
HVSFRPPGSSPSSSAKSRAPASTARGGAGSAASQARGDLPGYEQIGGLENQIELIREMVE
WPLTRPELYTHFGLRPPRGILLYGPPGTGKTLLAFSIARSTGSTLLTINGPSLSSAYHGE
TEARLREVFAEAKQKSPAIIVIDEVDALAPHREEGGEVERRVVATLLTLMDGLEDKAEPK
KRGEDDEEDEEDAEEEKEAPRIVVIAATNRPNAIDPALRRPGRFDKEIEIGVPDAAARLS
ILKVLLKRTPHAIPDDTLQSIAARTHGFVGADLSSLVHSAGLSAIKRSYSLLSSTSAPSL
SSMQLLPSDLDAALLSTRPSAMREVFLETPKVYFSDIGGQEHVKAKLKESVEWPLLHPEA
FKRLGVNPPRGVLLYGPPGCSKTLIAKALATEGGLNFIAVKGPEVFNKYVGESERAIREI
FRKARAAAPSIVFLDEIDALAPARGSDESSGPTGDRVLMSLLTEMDGIEELNGVVVLAAT
NRPDVIDPALMRPGRLDRILYVSPPDLEARKQIFRLNFAKMAVNEDVSVDELAELTDGCS
GAECASICQDAALSAMNEDMNTPNVRREHFVTAAKTVRRRITPEVIQEYEEWRDRSGVRS
A