Protein Info for mRNA_643 in Rhodosporidium toruloides IFO0880

Name: 9011
Annotation: K15117 SLC25A34_35, OAC1 solute carrier family 25, member 34/35

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 358 transmembrane" amino acids 16 to 35 (20 residues), see Phobius details amino acids 150 to 173 (24 residues), see Phobius details amino acids 251 to 268 (18 residues), see Phobius details PF00153: Mito_carr" amino acids 19 to 138 (120 residues), 52.5 bits, see alignment E=2e-18 amino acids 148 to 242 (95 residues), 58.1 bits, see alignment E=3.5e-20 amino acids 251 to 343 (93 residues), 53.2 bits, see alignment E=1.2e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (358 amino acids)

>mRNA_643 K15117 SLC25A34_35, OAC1 solute carrier family 25, member 34/35 (Rhodosporidium toruloides IFO0880)
MAHAATQTPVQPPIQLTAAGFVSGALAACTAVTITNPMEVAKTRLQLDGELQGRAHIKLA
PAVAGSGAAAAGIPEVHASVKAGPSGKVYTSALDCMQKTWKFEGLRGIQRGLGAAYAYQI
ALNGSRLGFFEPFRHAINSVAGYEQNSVHAWTSLLAGASSGVVGAILGNPLFLVKARMQA
YSPFNPVGAQHHYTSAFNGLASIVRKEGIKGLARGVDAAMLRTAMGSSVQLPAYNLAKTT
LNGWGMGDNVGVYLLSSTFSGMCVCAVMQPADTALTRMYNQSPNSIGPDGKPRGLLYKNP
IDCLWKTWKTEGIRGWYAGTTAHLARIAPHTVITLVTNEMISRQWTAWKRARTAVARD