Protein Info for mRNA_649 in Rhodosporidium toruloides IFO0880

Name: 9017
Annotation: K15192 BTAF1, MOT1 TATA-binding protein-associated factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 1973 transmembrane" amino acids 665 to 680 (16 residues), see Phobius details amino acids 704 to 725 (22 residues), see Phobius details amino acids 787 to 807 (21 residues), see Phobius details amino acids 1032 to 1044 (13 residues), see Phobius details PF12054: DUF3535" amino acids 768 to 1186 (419 residues), 327.9 bits, see alignment E=2.7e-101 PF00176: SNF2_N" amino acids 1420 to 1709 (290 residues), 210.2 bits, see alignment E=7.3e-66 PF00271: Helicase_C" amino acids 1765 to 1868 (104 residues), 56.4 bits, see alignment 7.1e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1973 amino acids)

>mRNA_649 K15192 BTAF1, MOT1 TATA-binding protein-associated factor (Rhodosporidium toruloides IFO0880)
MAGSRLDRLILLLDTGSTPSVRLTAARQLGAIAGTRVAHPSTNSHGHASVGTDVKLEEGV
TGPSKEGVWRGVDGEWNEVIGLVARVLPFLQAKSMDTRQAAAAALGFISRAVGIWDPSST
APSSSSADVAPPTDDTLSSVMSLSDFNLARVLTDGQLLLGSSGKEYGKLSQLTADELTKA
QKDALKNLGLGFGGGADDIGVDVGAELAAGAETHPAAPPASSAASTSSATFVEPPRPALP
PPRFKAGGAGALPPPRFKAGGDGATLAALADTKSPSPAYTPGPVPIPPPATPIPAPAPSS
AAPPPPPAPAEPEADPYAGLSARERNKLKRKRKVEEKAGIAPSAAPVPAAKKAKTADPTP
SPAPVAGPSDSSAVKQEDGDGDSKVIIDPAAKAKERERFGGEIQAKKAADRAEMEVKVGE
WPWRGAVERLAVGLLAPSWETRHGSALGLREILKLQGGGGGMLEGLTTAQNQERHRRWCE
DLAAKLLCVFALDRFGDYVSDQVVAPVRETAAQALAVLLPAMPASSTAEVLRVLVDMVHQ
RDVSKYIWQVRHSGLMGLKYFVAVQAHLVDGEVRGNGQLVKMEEDEDVKPRIAPSGSTDV
LKAIVDAALVGLRDKDDDVRSAGAATLVPLTNSLVEALPSELQTLVDLLWACLGDSKDDL
ATSIGGVMDLLAKLLAYPIVLKLLQSPSLETPLPQLIPRLFPFFRHTITSVRLAVLNTLL
VFVQLPSVNSSWIDVGLLRLVYQNLIFEDRPDIRRASEGLWLACLYRLATNPSTLQELVA
YSSPVLSAWFALLTSPIGTPINSALLWSATASLSGHGGMVHNVDKPMLNQDLALVSVEAI
ARGRIAGAAALGALLAIWPVETHDETFAPFLESALASTSAFQRFLAATVIEEWANQTVSS
GLVKPERSLAETSSLVARLVPRLHEVLATDAPATYAETEPILARLRCDCATFYSAFGSVG
KVPSAKLPSVPDAFGLQQAQLVANSFNALAALVPPKSKKTAIPQLEERLRKLQSGIAYFE
GVKSKHDRQVFAAVAGACIALQAIPAKITPLLRSVTTSIKTEDNVDLQTRSARSVAAFID
YCSSPASTIRVNPSPKLVGNLCAFLCQDETRTPIFASAKSSRAGILTLQYNPARGTAEKA
SKDAVAETLDQAAAKLVFRGAQLALTELATRFGPELLDKVPKLWSCMADPLIEMYGSGDV
VKGDAILSGDDRKAQELIDCLTVLPVASAKLEPALHKRLTSLLPALAVATRSRFAVVRYA
VAKSFATLCDIVPVDGLRFVVESVVPVLADPLNVDHRRGAIELISHIVDLLDVKILPYVI
FLVVPVLGRMSDPDDDVRLVATNTFATLVKLVPLEAGLPDPPGFSDELLAKRATEREFLL
QLLDGSKVAEYKIPVDIGIELRKYQRDGVSWLAFLARYQLHGLLCDDMGLGKTLQSITIL
ASMHHERAERYKATRAPDAVHLPSLIICPPTLTSHWQHEIKTYAKALRPVIYAGPRADRE
QLVRSFSKYDAVIMSYDVARNDVELLAPIDWHYCILDEGHIIKNGKTKLTKAVKSLKAIH
RLILSGTPIQNNVLELWSLFDFLMPGFLGSEKAFNDRFGKPIAASRDAKSSSKEQEAGAL
ALEALHKQVLPFILRRLKEDVLDDLPPKIIQDYHVELSPLQKQLYDDFSHSQAKQLVDGE
VKSSSTAKPQHVFQALQYLRKLVNHPALVFKPELPQYQAALAKVAGADASIRDLAHAPKI
RALQQVLLDCGIGASSPSDNASDEAVSQHRALIFCQQKMMLDIVENDLLRKLMPSVTYMR
LDGSTDVSKRHAICQTFNADPSIDCLLLTTHVGGLGLNLTGADTVIFVEHDWNPMKDLQA
MDRAHRLGQKRVVNVYRLIMRGTLEEKIMGLQRFKLNIASTVVSQQNSDLASLGTDQILD
LFQVSDTAPPATSASTGDKPMSQKAILESLDDLPTEGEYGDLDLSAFTASLAS