Protein Info for mRNA_654 in Rhodosporidium toruloides IFO0880

Name: 9022
Annotation: K14809 DDX55, SPB4 ATP-dependent RNA helicase DDX55/SPB4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 720 PF00270: DEAD" amino acids 41 to 248 (208 residues), 128.6 bits, see alignment E=4.6e-41 PF04851: ResIII" amino acids 52 to 245 (194 residues), 27.3 bits, see alignment E=7.1e-10 PF00271: Helicase_C" amino acids 324 to 428 (105 residues), 61.6 bits, see alignment E=1.7e-20 PF13959: DUF4217" amino acids 477 to 536 (60 residues), 75.3 bits, see alignment 7e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (720 amino acids)

>mRNA_654 K14809 DDX55, SPB4 ATP-dependent RNA helicase DDX55/SPB4 (Rhodosporidium toruloides IFO0880)
MAVDRLAAAPPSAGPWSKINPPLTPWVADVVRDMGFEQMYPVQASTIPLFMQHKDVVVEA
VTGSGKTLAFVIPVLEKLLRRGKSLGKREIGAIVIAPTRELAIQIHSVFSHFIAAQPQPS
SEPSTSTSPPPSTPPLAPALLLIGGNSLQDDKKQFFETGADILVGTPGRLEEFLLGSSSV
AMSKKGNSASGRRGSGNGVGDTKSLEVLVMDEADRLLDLGFTPTLTRLLDHFPKQRRTGL
FSATMSDALGQLVRVGLRNPVRVVVKVESKAGKGKAEGQDGRNIPTLLQNGFVVCSPSER
IAMLFRILRREAFPSSDSDDSSGARKFIVYFSTCAAVDYFFKALSALPSLTESGFSLHSL
HGQQSPTRRSSTYTAFTALPPTTPGVLLCTDVAARGLDLPDVDVVVQVDPPVDPRAFGHR
VGRTARAGRSGKAVVLLNKGREEGYVDFLNIRKIPLQRFEYPSQGESTLEQESQAVRDEM
RKVILKDRDLHDRGIKAFVSSIRSYSKHEASYLFRLQDLDLVGLAQSFALLRMPKVAELK
GKEKEIRERWEDVEVDWDTYAYADKVREKQRKAELKAQQEKRLEQESRKRALAESSAAID
ADGAGDEPEAKRHKKGENKDKNRAWSAKEDAEAKKAARRAKRVAKAKAKHAAQAAQRHAA
VEGDGAAGDEGESEAEDWKEELARVKREKKMAAARGGKSEKGVAQAGSGGLAGVAFEGLD