Protein Info for mRNA_655 in Rhodosporidium toruloides IFO0880

Name: 9023
Annotation: K11246 SHO1 SHO1 osmosensor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 387 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 104 to 126 (23 residues), see Phobius details amino acids 138 to 161 (24 residues), see Phobius details amino acids 173 to 193 (21 residues), see Phobius details amino acids 200 to 220 (21 residues), see Phobius details amino acids 228 to 241 (14 residues), see Phobius details PF00018: SH3_1" amino acids 334 to 381 (48 residues), 43.8 bits, see alignment 2.4e-15 PF14604: SH3_9" amino acids 335 to 384 (50 residues), 33 bits, see alignment 6.5e-12 PF07653: SH3_2" amino acids 341 to 385 (45 residues), 34.9 bits, see alignment 1.5e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (387 amino acids)

>mRNA_655 K11246 SHO1 SHO1 osmosensor (Rhodosporidium toruloides IFO0880)
MRSSRAPFSSLACLSPSSCSRSLSSASCCTLCSPSLKSNSTRHSFEPHQHPRTNEPASSP
PRLSRPRVLRKVARTSHTAQASPDSIPAMPRSGFDLRPVLSHPGFMLTLLVATAGFFAAF
IGQIVLESKYQSSDGKGSAVGVPWFGIFLQLFLNIGVFVTLATDNVGANRFQLSIFLAVA
LVMAVIGVNLGIFQDSSYQLAIGAGWLLVAMIDILWILYFTSSDDAWFASFFDIGSSMHF
SSRSSSSNFPSHRRGPSSRAGGSTLGMSGPAGGVSYQSYQGISKGGAASVAGTHGPASVS
VHDLQVEGNSPAGTAPSLMGEGAPEYQAPVLKARALYSYSASPDDPNEISFAKGEILDIL
DNSGKWWQARKTDGTKGIVPSNYLSLL