Protein Info for mRNA_658 in Rhodosporidium toruloides IFO0880

Name: 9026
Annotation: K11842 USP12_46 ubiquitin carboxyl-terminal hydrolase 12/46

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1012 PF00443: UCH" amino acids 51 to 507 (457 residues), 174.5 bits, see alignment E=3.1e-55 PF13423: UCH_1" amino acids 235 to 481 (247 residues), 76.3 bits, see alignment E=3.5e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1012 amino acids)

>mRNA_658 K11842 USP12_46 ubiquitin carboxyl-terminal hydrolase 12/46 (Rhodosporidium toruloides IFO0880)
MAFLRKWGAQQGGPGGVQATGSAGAQGGTVQAGAPPVATEWFTELPGERYFGFENIANTC
YANSILQSLYFSKPFRTLVESYRPYGSQPPAASPPPSSSAASVAPSIGPPASPSLPSSSS
SAALSALSSAGKAAKVVGNAIATPYSPATPAPSRPPPPSGRPGTAGSSGGGSRGTIFSAS
RRKNSLSSGTNDAAGPLSPSDPSSSPAAFPSTLPTIAQSTPTSETTLLSTLHDLFRAIST
QPKTLGSVAPEAFINQLKRDNEFFRSTLHQDAHELLNFLINSIAEVLEKEERKRAEDEGR
PPSIVGTGFEAHAKTWVHSLFEGTLTNETRCLTCETVTSRDESFLDLSIDIEQNTSVTAC
LRQFSASEMLCQRNKFSCDRCCGLQEAERRMKIKKLPNVLALHLKRFKYEESLQRHVKLT
YRVVFPFELRLFNTADNVSNPDRLYELWAIVVHIGVGPHHGHYIAIVKSGKRWIVFDDNN
VYPIEQNDISRYFGDTPGQGSGYILFYQATDLDWTGLDVPIPRTPSIAGTAVSRDRAQTT
STISTGGLGASAADEGVPPVPPLPPASISTASPPDGTVPLPNVPSPSAVPPALIDPMGAI
GVTDVVTSPPPPTASQSPSTSAAPALSNGYPAPPPQQRKASVVSLSGSSAGTPEISEKRE
GGWSTLRGKFSRSKSQASGVNGKERRMSMSSAGTPSVGGTTALPSIPSSNGAVTGDNAVP
SGAVAAADFAVTDSSSSGSPPANTAESSPQVNGSSTVPPAPASEDGSASVHSGAANASAT
ATPAQPAWVARRRDSRNSFGMPDGTRPTYLPSSSASSTSASLSSSGVLPSPTPLPPATAA
ATLPVPSSSFGSKTLGFLSRNRTEKQRPASSHAPLQNGIGLGLGPAGMAVGAASGKTRLS
SAPAGGDAPAATSKRPATASATVSSPNTPASRAQDAANSSPSDSGAATNGQSTPAPTAPT
LTRKELEKRLKEEQKAREREAKDRAKAEKERLKQEKEDAKRQDKLRRKLSVR