Protein Info for mRNA_659 in Rhodosporidium toruloides IFO0880

Name: 9027
Annotation: Hypothetical Protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1085 transmembrane" amino acids 349 to 373 (25 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1085 amino acids)

>mRNA_659 Hypothetical Protein (Rhodosporidium toruloides IFO0880)
MEPNSSPLPLQHRAHCTASTQRLALLQHPQSTPTERTTSSPASQPSQLLPPPLSSSQSTH
PFAQPVNRHSPLGDEGMADVSPGGGHGAPLQPLPAWLSRTSFPTATVDLPYTIATLLPNG
VPTLIITAQRVTQYGTDILQLPLTVDPGADVSGQNLGDLYTTAGGDATQTVVRELGGTRM
FTLGRESGTQALAGGTAAEGQSAPAAGTAMSAAEPPAASGGAPPASAYPPSAAQSPSPIS
ASQQPSPAPTASVASVAASLSAALASATGDSTPDPASVASLSSAYASATSALSAASPSSA
SSTFPTSAPPSSLPSTPPSVSSSTSSSPSPSSTSSPALNPTHHLTPSQLAAAIAAPLAFL
LLLLLLFICCLCLRRRRRRRAVAEEEGLLDSPASQPSQAGGKKRVKSGGVLWEWVPTRSP
SRLSGRSGSGRSVLSRLTGGLLGRGGAGGARSMAGSSPGNSPVEGEKGFSPKSGGGGEER
SPRTEEEKGLLSGGEGEGGRDAGVAGGGAGLAAAGAAQQAHLYARQDDTRRSGPVEPFDD
IDLTSPRLDLDSSTCPSRPLSPPTLLPIQPSSPIRLSRFYDPAGASARAYFPPSPSSYST
PSRFVPSEVPYSDAHYAPPVPLTYAEGLSVPLGPVRQATSTLSQLWQGYETNSPRTDAGD
EGRKRESSRLGYLSWSTLDGGGGGQQQEYTPPHTPELPALRVIHEREDDERSYSGSSEGE
RRTQGRQAVVSEGGWLSGRLSGLFPSTRPSRDTLYEADEEDDGADEGDRLRVPLGVERRG
SGDTGGSGQSDEFRGLTGGDLFLNSPRWIGTRRRRSSPPPFSSFEPLGSTSISYDPPIIL
HHQASSTSLDPPYRQPRHWSSFATETESRYHDADSPIFAPTPAESPGLYPSSSQLPRVTT
VVKGRHQREDSGVSVLGRIAASFGALKGGVAAGLGIDGEGAGAGAGVTRRRGMPRRREFS
TESSMDPFQYSYATANLPTVPSPTSSPRKQRTRRSLTALRHSQSQPMMQKPSSNAPPLPF
PSARPLSTVVGRYHDPFADADVDGGADDERAVQQRAHQERREYEYGQEREGPDMGEIRRV
GEQSE