Protein Info for mRNA_664 in Rhodosporidium toruloides IFO0880

Name: 9032
Annotation: HMMPfam-2OG-Fe(II) oxygenase superfamily-PF13532,SUPERFAMILY--SSF51197

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1722 PF13532: 2OG-FeII_Oxy_2" amino acids 1321 to 1465 (145 residues), 61.3 bits, see alignment E=7.4e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1722 amino acids)

>mRNA_664 HMMPfam-2OG-Fe(II) oxygenase superfamily-PF13532,SUPERFAMILY--SSF51197 (Rhodosporidium toruloides IFO0880)
MAAQGDDSDAESDCSALSSLSALDARWSPIEEPAPPPLVPSEAVAPTTRLQAVMDVEQEE
ECLGHDQRARAGPSTRRSTRSSLPVSPDAKIGEVDSGSEPSRRASEVVGLDSGIAKPQAD
GPAKLAKEDQKRSKSKKRLAPRDDDEYEGRYDPELARRSSMRNRKSRGRRQADSASQITP
TPSALSLDESRARTDVERPRTKRPRPSEADMLLSSAPEATVDLAGLTRRTAKLLEVYATS
SARPAVALSVDTNKSIDSASGIRPSSKKERRKERVREEKRAKPSREQAELSRDFFACSSD
LLSDDDAKPSTRSSKRLRSSIALSTSAPLSPVASTSTAQPHADELESIESRALGMPKSDS
REDSTEEERKDGEGSSRPRREVAELSRDIWASPSESLVSEEKPTTRASKRLRLAERTAAD
STDEDGGLPLGEPPAAPLPPAETLAESTSADTMSADGTASKQARRKERKTKEERKKAKKG
SGGAAREVADLRRDFFSVSDVDALAEESGRSTRKSKRRCESSMVVSPPDPAPTPAAPATS
SVDMVVDVDHTGSTTDAMSPEPSTSLLKRSSRQRRLPARYDDDPDRFTIVRNAEIFEEQE
LRARMRKASAAKATSSTMWTGGPSQPGETSRQLAQPPSRPTLPSLAETGLLTLPIKTPRK
EQHSPAFSAPSPLTTMTPLARPAASVSAPTAPVKKTKKARRAVPIVPTDPSTSLSQPATT
AAPVETASDSVSEAPPAVPAPNKAPKQSQATKTRIRHPALDSRASWVEPEKNLTLTTDGR
PPIWCEGRQELCETLNYFKAYQGGHYDSQERCLGYLLDGFGSANDVCTNKGKIVISHGGG
CGEVVPVTSAPSTLKATSSSTIKTSNASYIYRLKSSQTRDNLRLRALFNCLETQTPVVLL
AGAGWTFFPKLSSLGSSINEDGEEVDKARYAVLGHYLVTDIWPEGEPIEDDGASKGKDKP
GHFVRFKVRFEWVPSQGKPWFEDHIGVESISKEATPEPSSPASDAASLDSGFVDITEATA
EQASVDEGCVTCEACHQTHRRVYQENVSCYNEACSNFFLVDGEMHHPSSLTYQPSILAPS
DLPQDTLVPQSLFPRTLQSLAGEVAAADYSAEAWRGFGCTACGRLSSRADWIKLKCAGCG
AEGNAVGKAFTIQDLRAEERLAAIKAGKIPPSDYKPVQPVFVEPSMRVRPILHIPGWQGY
TVEMLPSVTSEDAEDSTASCSSVGRALAHHLWPVDDEEAEMADNLFEGYQGAEAGEFFRR
NKLSRHHAVGGLLCQQFTFNAGEHYRNAITATTYPFPPTALPSSSVETPVPDDETTYAPE
CTREARNHLKTVVQLLVGPNELADFNEILSVAYMSGGKMNYHDDGERGLGPYVASVSLGS
DALMTFRAKGKKKTRAFGGGAGQTGKKAKGATSTGDEPEETEEGEGRKADKTKRIVCKMR
LRHGDVMVMEGEEMQRLFEHKVEPEGLRYAATARFVGPDHLNPAPKSRPQPVSTGARFAY
QDAALTTATPAPSNIGASTSKAAYAIPLESKKPAGVAGWQAYVQQEDAQFFPSTVPTTTH
TPRSSTRPATRRRPTFIQPSPVPPDEWASPKIPRSALPPLPTVPSFPQPLPQSGAPPHAI
LPPRPPGPLPSPNPLATHIPIRMSQPTPPPAPAPTFGAPQPAMQPPSLVHSALERRQAGL
LAQNHTAIMAHGMPGHVAPTFVPMGAFVFPQMPMPQAMPRPF