Protein Info for mRNA_667 in Rhodosporidium toruloides IFO0880

Name: 9035
Annotation: Interpro Ribosome associated membrane protein RAMP4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 86 transmembrane" amino acids 57 to 79 (23 residues), see Phobius details PF06624: RAMP4" amino acids 26 to 78 (53 residues), 24.7 bits, see alignment E=9.7e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (86 amino acids)

>mRNA_667 Interpro Ribosome associated membrane protein RAMP4 (Rhodosporidium toruloides IFO0880)
MALQSAAVERCPETDEDEEAGSHIDLRKRNQAFQSKVGKVNKLKQPDPLERKALPRWIIW
LFLFLIVGGFGLELLQQIYNFFSRLR