Protein Info for mRNA_730 in Rhodosporidium toruloides IFO0880

Name: 9098
Annotation: KOG0061 Transporter, ABC superfamily (Breast cancer resistance protein)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1072 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 327 to 349 (23 residues), see Phobius details amino acids 816 to 839 (24 residues), see Phobius details amino acids 851 to 872 (22 residues), see Phobius details amino acids 893 to 918 (26 residues), see Phobius details amino acids 929 to 952 (24 residues), see Phobius details amino acids 959 to 980 (22 residues), see Phobius details amino acids 986 to 1007 (22 residues), see Phobius details amino acids 1019 to 1040 (22 residues), see Phobius details amino acids 1046 to 1068 (23 residues), see Phobius details PF00005: ABC_tran" amino acids 415 to 567 (153 residues), 94.8 bits, see alignment E=6.9e-31 PF01061: ABC2_membrane" amino acids 799 to 1008 (210 residues), 119.9 bits, see alignment E=1.1e-38

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1072 amino acids)

>mRNA_730 KOG0061 Transporter, ABC superfamily (Breast cancer resistance protein) (Rhodosporidium toruloides IFO0880)
MLPFAPLLAISLIAPTSSLALTPSAALEQTSLTAGSLFAIPSRPPECPPCNPFNCVLPAF
SCLNNGECNDYNGQCICPPGFGGEDCSKPLCGSLADGSERYPREGDTCECKDGWGGINCN
VCETDEACEDLLARDPASSLRPSGPKEDDLDRAVCYKEGYGVKEVYQMCDVTNRKILDML
PNRPPQVTFTCDMPSQTCGFQFWIGRVESFYCGLDNCTVKHDVGFEANSTEYRCEKVRCA
CIPGRMLCGEDGSVDISDFLSEEITGPGKFTTRTGEPSRFEEPAMNQLINDIFGDTYITL
NCKSGECLRLGDVPGFVRPPKPTSRTWVVLSIVAVVAVLLLGLFLFWYLGRGSTSSVEYS
FLGGRIRLPMNGHSSPSSNGADASKSLLEDHVPAALQFSNLSYTLPSSSGGRRVLDSITG
SVQPGEIMAVLGASGAGKSTFLDLLARKSKRGTVEGEILVNGRHASETEYRRVVGFVDQE
DTLMGTLTVYETVLYSALLRLPREMSFEDKRLRTLETMHELGILGIRDSRVGESGARGIS
GGEKRRVSIACELVTSPSILFLDEPTSGLDSYNAFNVIESLVQLARTYKRTVVFTIHQPQ
SNIVALFDKLILLAHGKVVYSGRAEESQAYFDKIGCACPPGFNIADYLIDLTMQNEKSSA
SSDASVEDALIQLDGSRRDPELGVGSPARRSTAPPSVDGDETELETRNGSVRSNASNGLK
RFLPSSLGGPSTPSDQPAPPPHIARLVDSFSSSDVARSTRDEIAAAKREAARGAGGGTTS
GANGAMILRNYKRASWWSQFTILSGRSFKNLYRDPMLMLSHYAVAVIAAGICAFLFRGLT
LDIPGFQNRMGLIFFALALFGFGCLTTLATFSSERLHFTRERANGYYNPLTYFAAKLLFD
VIPLRVIPAFVFGAIVYAPVGLVPEVVSFWRFILVLVLFNLSASSVVLLLSIVIKNAGVA
NLVGSLVMLFNLLFAGLLINRDKLPWFLQWLETFSFFHAAFEALLVNEVRYLQLKDHRYG
VDIEVPAATILSMFGFRAQAFWFPDVTLLLCYFGGFTVLSYLSLVLFVRERR