Protein Info for mRNA_740 in Rhodosporidium toruloides IFO0880

Name: 9108
Annotation: K13103 TFIP11 tuftelin-interacting protein 11

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1124 PF12457: TIP_N" amino acids 23 to 115 (93 residues), 41.2 bits, see alignment E=2.8e-14 PF01585: G-patch" amino acids 390 to 431 (42 residues), 40.5 bits, see alignment (E = 3e-14) PF07842: GCFC" amino acids 640 to 940 (301 residues), 250 bits, see alignment E=5.4e-78

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1124 amino acids)

>mRNA_740 K13103 TFIP11 tuftelin-interacting protein 11 (Rhodosporidium toruloides IFO0880)
MARRKQKWIEDDGSDSSSASDVDEDPSLDINDPEVAAERELFANPYGRRGKKRTREEAQE
DATYGIWAQGDEEPRGGGSGIGISRGGRAKKTDYLKGQTFVAAGSSAKSGDRDAPIDNLA
TALAIEAARSDEEDVAMEMGGDSSAEEDGGGSVMSAEDIASRQVEEDEARDGDEEDLPPV
PGLAGPPRSPSPPVVDEPPASALAFAPRGLGARRGGIGSGAGIGARGGIGARGGIGAKPL
AFAAATAASDSSAPASGAASPMERASTPHAGLGARGGIGSGASAGQGRGGIGARPHQSLV
DTLRAELAGPAPSSPSETVTESLPNSADASRTASPAPHSVSPAPAGPSTASDSRERRSFL
PSAKPSFASKPKAKLSASEAKHFASLSASGSIGMKLLEKMGWQSGSGLGKEGQGIVTPVG
EGQKIRRKGEGIKSGERSKGALLEERRRKGGDVDEDEGGAATSAAAAASKKHAAHASAWQ
SAKPKKEKKQKTQYKTYEEIVAESSTQEGEGFQQELLVDLTGQALPNQTLSSLPAFGAAS
ADPTRLPELRHNLTLLCSTLSSSLKSLAREGAGVEQRRAYLAKEEARVRQLVEAQERKIE
RLKEVMQCVERVRVKEGEALELLRALQNQEEVVAPEAVLGRYEDDFDRLLGEFSQEYEEL
GLDEVVVAAIAPILRRLWQSWDPLSNPAYTVTQLKRFRKLFLIDKNALPTFSASSTDLDV
YGQQAKAEHEAKARKRQSERQMTPYETLMWTVWLPKVRSAVNNAWSPSEPQAAVELYTSW
LPLLPSFLRDNILDQLVLPKLSAAIADWSPSAFKRGSAPALHTLVFPWLEHAGPRMDMVL
DEAKRKVRSWVKSSWRPREGVPKGLEVWKDAFAKSDWDTLLLKHVLPQLGSLVRTSLVIN
PRQQDLGPIDAVLAWKPLLRSSMLSQLLEAEFFPKWGEALWLWLTSDGVNLEQVAEWYSW
WKSYFPDDVVALSGVSRGFRKGLDLMNQAMALGEDVKYRLKKPDFTPKHARPSTPSAGSA
ATTPKATPSARRPISTAPPAPEPVDDISFRAVVEEIVSAANLVFLPTGKVAPQGQALFRV
SKGIEGKGGVTVYLEDDVVWIAEKGGEYSPISVDEMIKRAGGAQ