Protein Info for mRNA_741 in Rhodosporidium toruloides IFO0880

Name: 9109
Annotation: K12858 DDX23, PRP28 ATP-dependent RNA helicase DDX23/PRP28

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 903 PF00270: DEAD" amino acids 490 to 699 (210 residues), 159.9 bits, see alignment E=8.6e-51 PF00271: Helicase_C" amino acids 735 to 844 (110 residues), 95.5 bits, see alignment E=4.1e-31

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (903 amino acids)

>mRNA_741 K12858 DDX23, PRP28 ATP-dependent RNA helicase DDX23/PRP28 (Rhodosporidium toruloides IFO0880)
MPPQKTPLSVESLLEQQRKEKEEQSRPKFLSKQERQALALAKRAAEVEAAKDRELEAQKR
RDELEKKAREEARDLYYQQQSSYGQQNGAGTSGGRHDGQQFVGYGGQQQGGLNYGSAQGD
QYYGGGRGGYGPGGRGRGRGRGGLGYHGGPPPPSGPRGGDGYQGVPSGPSGRGAQGRGGA
RGGGPGRGDDRWAGQRGPGPALVDRDTDVRGGRVSNAQPATGGAMDIDGTAGGKDLVAEP
MKVDSSTPPRHATEMPPPPPPTNGDAAPPPNGDAPPAPPTDAPPPPPPAKETSPASNGKL
TLAELAELNARQSASSSSVPVLNAQLNAARYLGAKAPDKRVKRNKKGPNGGPGRVDFDWD
RNDDTLADEVDPIYAPTAAPVVPGGPAASNTPTGQSMRVTLFGRGRLAGFDADVENMGGK
KTKGALDERHWSEKSLEEMRDRDWRIFREDFSIGARGGHIPLPLRSWKESKIPQPILEAI
EEIGYKEPSPIQRQAIPIGLQNRDMIGIAETGSGKTAAFTIPMLAYIARLPPLSDENRSK
GPYALVLAPTRELAQQIEAETNKFCRVLGYRCVSIVGGKAIEEQQFNMRDGAEIVIATPG
RLKDCIERSVLVLAQCTYVVMDEADRMVSLGFEDVLNFILDSLPVSNLKPDSVEAEDANK
MTMSLAAPVGEENEVAPSLALYRQTVMFSATMPPAVERLTKKYLRRPAVVTIGVAGQAVD
TVDQRVEMINSEEKKKSRLLDILNNGGFQPPMIVFVNQKKGADVLQKDLQRAGWNSVTLH
SGKNQEQREAALNSIRNGENDVLVATDLAGRGIDVPDVSLVVNFQMSNTIEAYIHRIGRT
GRAGKTGTAITFLSDTDEELFYDLKQEISKSPVSKLSPDLARHPAAQSKVSSAMKRRAAE
LDD