Protein Info for mRNA_757 in Rhodosporidium toruloides IFO0880

Name: 9125
Annotation: K01493 comEB dCMP deaminase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 889 transmembrane" amino acids 405 to 420 (16 residues), see Phobius details PF14437: MafB19-deam" amino acids 708 to 862 (155 residues), 38.4 bits, see alignment E=1e-13 PF00383: dCMP_cyt_deam_1" amino acids 708 to 859 (152 residues), 87.2 bits, see alignment E=5.9e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (889 amino acids)

>mRNA_757 K01493 comEB dCMP deaminase (Rhodosporidium toruloides IFO0880)
MEEQDDREPLVSAKDEEQEDAKPIQAGEGERRRYLLPFASLGTLADQPRGSRAQRTDARV
DYEVRAVDDGQETTRASRRSRSTNPSPKPRKRVKQESKEEQDEADLLSEDESDGKMEDFP
DLVEAMGDVNRPAELPADANLLRPASLSNFDVVDENTSELSGLGMFARRDLGGNEQNTTD
KTQKRIDKWGTMRKCWRSSRNLGCRGPGKAFLVSTTPHPISHQSRQGRFSVFLRLRDAAK
DVECWKAYAVYRYNWCGLAKEGEFDRLTEKEKDQVIDVFCSYLRGGKNKFVEWLFREVKV
QLNPDDPTLSSLWSTRKTKTVSWQVRRRQQRLALREALSQNNVFPQGWAIMVYDGPLPAD
ELDFIKRRRAVRQAGGDPRSIREDALRMPCSTRPYTSIHLTSRIILLAFRCSYLVVTCGL
QGFLSKSKAFPHEELLFPRSRPDATRVCPDQLARTMLVCIVGPPQAGKKSLADHLVRERS
FTRVHLVPSLPTSRSQDDLYFTSSSDFLDHATRTWRRHYVTVDLVSKAKLAEFAKRPFVA
VVAVDAPLGVRFRRAVAVANSAGETPPSLDDFVEADDRLYHGALPLLSQIDGVEEVAELF
GSRLGGPGGPATPAKKRPTQLSNDPPSPTPSPFKQISPEPSPELSRTRLFQPAEQDSLQS
LAQLPPADSTLSSILPLAHLTIPNPHSSLGPFLSSFSLPVLAELLRPSWDTYFMLLASLA
SLRSNCMKRRVGAVLVRDKRVVSTGYNGTPRGVKNCSEGGCGRCNSHGDGFGDEADPEGV
DDEAEMLAANGQRKGMSRVGEALDECLCLHAEENALLEAGRERVSGGGTEGATLYCNTCP
CLRCTVKIVQCGVEEVIYSLSYSMDSASRRVMEEAGVVLRQIPQPPFPK