Protein Info for mRNA_765 in Rhodosporidium toruloides IFO0880

Name: 9133
Annotation: K12849 PRPF38A pre-mRNA-splicing factor 38A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 196 PF03371: PRP38" amino acids 11 to 173 (163 residues), 195.4 bits, see alignment E=3.8e-62

Best Hits

KEGG orthology group: K12849, pre-mRNA-splicing factor 38A (inferred from 59% identity to scm:SCHCODRAFT_38787)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (196 amino acids)

>mRNA_765 K12849 PRPF38A pre-mRNA-splicing factor 38A (Rhodosporidium toruloides IFO0880)
MANTTRAGALSVHGTNPQYLVPTVIRKRVYDTLYWKEHCFALNSATIIDRAVELKYIGGT
YANTRPTEFMCLVLKLLQLQPEREIVLEYLRAEEFKYLRALAAFYVRLTFDSLNAYETLE
PLLDDYRKLRFRGMDGSYSILTMDEFVDQLLAGEMVCEIQLPRLTQRKVLEDTEGLAPRR
SKLGKAMAVMEGLEGR