Protein Info for mRNA_780 in Rhodosporidium toruloides IFO0880

Name: 9148
Annotation: K15172 SUPT5H, SPT5 transcription elongation factor SPT5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1315 PF11942: Spt5_N" amino acids 124 to 234 (111 residues), 71.3 bits, see alignment E=1.8e-23 PF03439: Spt5-NGN" amino acids 240 to 328 (89 residues), 77.2 bits, see alignment 1.1e-25 PF00467: KOW" amino acids 556 to 584 (29 residues), 30.4 bits, see alignment (E = 4.3e-11)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1315 amino acids)

>mRNA_780 K15172 SUPT5H, SPT5 transcription elongation factor SPT5 (Rhodosporidium toruloides IFO0880)
MEPVSPQANQGLDDGPPVPAAFIPSHTAPENDGALGQTLSEIEAHADENDVKDEEGEPAD
DQPEEVGKDPEQDLDEEEGSENKDEAKGEAEDDEDEEEDDDEDEDEDDDRPRKKRRRRRG
GNQFLDIEADVDEDEDEEEEEGEEGFVANDNFIVERREPRREADGGLPAGEDEGDDGGGD
FDGDASHRRLDRRRMAQRDKEAAELAEALDARYKRNKYSTSGAEDWAPKALLMPSVNDPS
IWGIKCKIGRERDLILSISRKAAALAASDGAPMQIISAFQRDSLKGYIYVEARSEAHVRN
AVHGLIGLYINGPNGIFLVDIEEMPDLLKTKQKKVDLQAGGWVRFKRGKYSGDLAQVIAP
SENGDEIAVKFIPRIDLTPKDEALQTGSDGKKRKKGSSMPIAFRPPQRLFNADEISKIYG
AKEVTRRGGGLCIFRGDDYMNGFCEKDIRLSALTTENVQPTIDELTRFQGDSANGATGAD
GSLDLTQIADATRTLSKTILQPGDHVDIFEGDQKGVYGTIESILGESVVVVPHPDLQLEG
TKIEIPARSVRKRFSPGDHVKVMQGANADETGLVVKVEGDVVTFLSDLSSTEVSVFAKDV
REAAEVGSGVNVIAGYELHDLVQLDPQTAGVIIKMERDQFRILDQTGSVRSLRPSQISGK
VDSRHAVATDKEGYDIKAGEVMKETLPNNPTNGRRGKVLHVYRSLYAFLHSRDVAENGGV
FVAYSRNLESTAPRPNKPKIGTGFGGGIGSGMNPERAAMLGVNGAPQQQPQVATGVSFRP
DGRINRRVAVTKGTYKGNAGIIKDVTGNQARVELHSSNKVITVDLGKLKEQKDDGTLVEL
FEFVGRGGGGGGYGGRNGFGREGSSFSTASNMAPLGGAGYGGGYGARAGSQASSGYGGGT
GMYSGGKTPAPYAGGKTPAPQYGGATPFGGGVTPFGAGGAGGATPHGPGGGAFDPSGRTP
GYGGGASSAWNASSRTPFIRPGGGANDAFNPSSRTPYHPGAAPAPGAGTTPNPYANAAGF
DGGRTPDHRRLAGGRTPYGGGKTPAYGASGGRTPAYGARNGYGAASAPTPAATGAPTPAA
TAGGSGWDDDEWGSGSGAASAPTPAAPRGGDYMGAPTPAAGAPTPGAFLGAPTPGFTGAP
TPAAYPSGPTPGPSGSYGAAAQTPGNADGYPYQTPGAYAGAATTAAEPIEEREMQGGIVI
PHPSEWVIPGVKIIVKASGFQGGRLTGQHGIVKSSSSTTVTFTLDPYGDLIEDFPIDDVE
PMPPYQPDQQVLVIAGDYRGERGVTRSQDGEDYWVERPGGKPSMVVNVAYLVELA