Protein Info for mRNA_783 in Rhodosporidium toruloides IFO0880

Name: 9151
Annotation: HMMPfam-Magnesium transporter NIPA-PF05653,SUPERFAMILY--SSF103481

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 530 transmembrane" amino acids 18 to 38 (21 residues), see Phobius details amino acids 59 to 80 (22 residues), see Phobius details amino acids 89 to 109 (21 residues), see Phobius details amino acids 116 to 137 (22 residues), see Phobius details amino acids 164 to 182 (19 residues), see Phobius details amino acids 220 to 240 (21 residues), see Phobius details amino acids 266 to 288 (23 residues), see Phobius details amino acids 296 to 317 (22 residues), see Phobius details amino acids 323 to 345 (23 residues), see Phobius details PF05653: Mg_trans_NIPA" amino acids 16 to 144 (129 residues), 27.2 bits, see alignment E=1.1e-10 amino acids 240 to 349 (110 residues), 38.3 bits, see alignment E=4.3e-14

Best Hits

Predicted SEED Role

"Adenylate cyclase (EC 4.6.1.1)" in subsystem cAMP signaling in bacteria (EC 4.6.1.1)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 4.6.1.1

Use Curated BLAST to search for 4.6.1.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (530 amino acids)

>mRNA_783 HMMPfam-Magnesium transporter NIPA-PF05653,SUPERFAMILY--SSF103481 (Rhodosporidium toruloides IFO0880)
MQNEADLYTPRTYSATDFVIGLFITLAASLTNALGLNITKLDFTRQEALPPSQRKPDFLR
IYWLLGLGLYIASQVVGSTLALEYLRAEYVAPLGSTSLIFNFIFAYLLVSTPVTRLDILG
TVVIILGVVGVVVFSNIRKETPTIDAESNLSLSLLKEIWGRGDWIAYLVMLEIATIALWW
LSRIVFEVCQSRVLDEARTVVKRAVQRWSEPRPDASIRQLSAFCWAVTSGLLSGQTLILA
KSGVKLVTSAIQHSDPNEPNQFTSPLTWLIVILLVVCAVTQVYALNLALKAYDSTFVIPV
MFATYTVSAFLNTLVYLDQTKTYRLSIFLLIWASIAILIAGVVMLSMKKQPKRTRPARSG
STASSVHGRNPFDDSAAPDSSALDSPTKPGFARAYTGASGDVEAGALPEAEPPVLRKGQG
WWAKLFGGLPADAATSAPASTPDIELSQSARRKQGGVERLDDGDSVLASERTSQHGAEEL
EMDDVDGLGRYAPSVRSSVGKGGEDDDDFGEFEKATGAERVDDDQGRHRS