Protein Info for mRNA_789 in Rhodosporidium toruloides IFO0880

Name: 9157
Annotation: K14459 HEX hexosaminidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 786 PF00728: Glyco_hydro_20" amino acids 220 to 474 (255 residues), 44.5 bits, see alignment E=1.5e-15 PF18088: Glyco_H_20C_C" amino acids 559 to 770 (212 residues), 176.6 bits, see alignment E=5.6e-56

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (786 amino acids)

>mRNA_789 K14459 HEX hexosaminidase (Rhodosporidium toruloides IFO0880)
MASQASPLASLTQTLPEPIQVRPAVPVRTASSRTIPGNSRSTLPRIHLAIPSDALPEDVQ
QGVREIAREAVRENVRVVEAGAGQLSGQGSWVWTIRFDKRDDLRPGAMVIECSHDDFTTL
PDGDEFSINVSYNRPIEAFRALGHILGISRGLATFSPHSPTSSSFPSASDIPNSGANTPM
DTDGTPAPEANGSKGGEIKWTGNVGAQLRREEECLFETVGVMIDCSRNGVLRVERVKMLL
RHLALMGANMLQLYCEDTYQIPGEPFFGYFRGPYTESELREIDDYAFALGIEVIPCIQTL
GHLGQMLQWPKYGHLRDTAEVLLAESEETYAFIEKMIRSISGPLRSKRIHIGMDEAHGVS
EGRYRQIFGYKDGTQVFTDHLRRVNKICIEQGLNPMIWSDMLFCLPAKNNQLSGYYDPNS
VVTAELANSIPSEIETVFWDYYHTDSRPYTAKIAQHWQLAGKAPWMASGVWTWSRFWTAL
PFTFATVRASMKASKEANAGVKHTMCTIWGDEGNEFDLYSALPGILYHSELAYTAREVDE
VDAALFRRKFDGIVGADLDDYVYASKLDDTQPESQPIDARTHYTPNISKFLLWEEPFFSF
LSPQYRGFDLEHHFSALASYLEQALSTDFSTMTRVSLPHSINDFPLNSRLRLPYLLASVL
SLKCHLRERLVAAYKSGDREELEALGGKEPLSRMHRLRALVKELHGQHRENWFDMYKPFG
WEVLDLRYGGLQARLETMHQRLIAYLDPNDTNVTKVEELEVELETVYPNSCFLMLDYSRA
ARATYI