Protein Info for mRNA_798 in Rhodosporidium toruloides IFO0880

Name: 9166
Annotation: K15376 GPHN gephyrin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 687 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details transmembrane" amino acids 566 to 586 (21 residues), see Phobius details TIGR00177: molybdenum cofactor synthesis domain" amino acids 4 to 153 (150 residues), 86.1 bits, see alignment E=1.2e-28 PF00994: MoCF_biosynth" amino acids 7 to 158 (152 residues), 91 bits, see alignment E=8.6e-30 amino acids 433 to 590 (158 residues), 83.3 bits, see alignment E=2.2e-27 PF03453: MoeA_N" amino acids 257 to 418 (162 residues), 115.9 bits, see alignment E=2.3e-37 PF03454: MoeA_C" amino acids 607 to 678 (72 residues), 51.2 bits, see alignment E=1.8e-17

Best Hits

Predicted SEED Role

"Molybdopterin biosynthesis protein MoeA" in subsystem Molybdenum cofactor biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (687 amino acids)

>mRNA_798 K15376 GPHN gephyrin (Rhodosporidium toruloides IFO0880)
MTFSVALLCVSDTAAAVPSSDRSLPLLHDILTSQPNDAYRVVAQGIVPDETAEIVENVRT
WVHMGVDLILTSGGTGMGTHDRTPEAVAPLIDKPAPGLVVAMLTSSLAITPLAALSRPVA
GIAHSPSGDGTGSIIVTLPGSPKAAKENLECLLKVLPHALELAGGARSRTTAVHERLQRG
EDGMKGVQEAVVQHKHRHEAPEPPTHSHAHAHAHTHHAHSHEHGHHGHHVPRPRTLMSQD
PSSAIASRQRKSPWPLISVRDALSLIFQHTPVSPVQTLTVEPSLVGHVLADDVFSSINVP
SLPSTNIDGYACVAATSPPGVYKVVTSFPTSPLPEGTVYRINTGAPVPPGLDACIMVEDT
EVVSRDESGEEKEVKFLAQVEKGENVRREGSDVRTGEKVLSKGDVISSVGGELGTLAFVC
KRSAQVHRRPTVAVLSTGNELRDLQDTSTPPSSSAGSANFHGIPDSNRISLISVLENLHY
NVVNLGICGDTMEETKAKLKRGAEQADVIVTTGGTSMGVGDLLKPCIERELGGTVHFGRV
AMKPGKPTTFATLPAHPMAPSRDPTLVFALPGNPASALVTFFLFVLPSLRKMEGRREDEW
ELPRIPVTLTSTVPLDPRPEYHRVQIRPTSSGLKAFSTGGQRSSRTVSLAGANGLLELPA
SKEGDVERKEGEVVQCVLIGELGPMAA