Protein Info for mRNA_806 in Rhodosporidium toruloides IFO0880

Name: 9174
Annotation: KOG1515 Arylacetamide deacetylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 585 transmembrane" amino acids 34 to 56 (23 residues), see Phobius details PF10340: Say1_Mug180" amino acids 134 to 280 (147 residues), 58 bits, see alignment E=7.9e-20 PF07859: Abhydrolase_3" amino acids 149 to 283 (135 residues), 78.1 bits, see alignment E=9.3e-26

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (585 amino acids)

>mRNA_806 KOG1515 Arylacetamide deacetylase (Rhodosporidium toruloides IFO0880)
MASTSNQPDKAQENKHVILPLSRAAPDQVLNLRLILHFLALVLPQIFIVLPARIFVTHVL
LRWRSPIVRVIGRPALADYVSKLAQFILSRCHTAQVRIVFDRVRSYKLVQSGPYFKGCRD
WVTKIEVNGTAGRWIALPGTRREEDDVVLFFVHGGGFVVDTGSNAQDILLHVTKTLNLKK
HTQASVFCLDYRLAPEYKYPSQLIETLAGYHYLVNTLGISEDKIVIAGDSAGGNIATAFL
LHLARPNPDIYVPEELGPTPKRPAGALLISPFINLASRSSSSFANPDYDFIDLGGGFRAA
CDYVGVYPPPGFRFPMPSYHPRWHFEFPHPHPPTDGRELHTQWGWAHCEGIEKFNSPYVN
PIVCQDAEWWKEACPGDGKTVVTWGGKEIFADDDEAFFKQLEKSGVKPAKLVKKFGAHDW
ILHDWSVPLAWKTKSKGPDKDFYFGMNAIVDLLSRIAKEAKESPSVKRASLARSPSWASR
PDVKAVSPESAKSSPSRPAGPALGPAPTPLSSKPSAPASAKPAAGNDSYATTASHDSLIP
PDAPVLASGEGDILTRSTLGDSGVIVEKASEKAKGQEKPKPKNRK