Protein Info for mRNA_826 in Rhodosporidium toruloides IFO0880

Name: 9194
Annotation: HMMPfam-T-complex protein 11-PF05794

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 708 transmembrane" amino acids 465 to 491 (27 residues), see Phobius details PF05794: Tcp11" amino acids 354 to 634 (281 residues), 37.4 bits, see alignment E=8.8e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (708 amino acids)

>mRNA_826 HMMPfam-T-complex protein 11-PF05794 (Rhodosporidium toruloides IFO0880)
MSAFAVHLDRLLVQLRDLPSSSPPRLAHLTIRLERAYADLRAVGTPAPAELFIRIRSRLQ
ELGEGLREARSAGVEAGGAVSWEQLDADTREVERDLVGLLERSAGTASTGGGHSRTPSAD
LPRRIPAPPQLPTSTPVHPPSHAAAPPRTSNATDPPATSPVRPVSPSIFNPAFLSYHLCI
EASALIPEERSMGGMLREILFAPSDAPDALDRLRGRVAEQFKRAYFEPFEATLSSDTSTA
AEKAKAWDGLWHDVKDAALPLAEMYLEVKEGEDSAKRFRQEAEAPLALAGQDGFDASAAL
ARLESIVGVLKRYSVPRGEMVSAILDNIISAKSSSNPSRNLVDLVRQLLELVNKLEEDLR
ASHNRLMQNKSFLSDADIERVAQEQMRSKAHAEERRVISEVFGGTAGVVAVTRVWLSQEV
GPDGPLGESTVLPKDLVANSLVEMLFKDQAVDFHNEQNCPPPIFFIPLFALVYLQNQFQA
LIVLACLATLVGSTPAPSCTSSISAPDNLTPFVERLWTILQSEIGPTALRRTPMAGDPSS
NAPPSATRIANLADEVISHRRTMLVASGATLSSEEEARLRAGVERILRYEDPVYKLLKGR
LKASVEAALVDFATQVPGGEAGAAGSSSAPSGLRTGRSSQNPPAPFAALRDVLSKLSPGP
PPRTLQLQPAKGFERPAFLREKVEEVVRTRLIANVWEWMEESWSDVLS