Protein Info for mRNA_829 in Rhodosporidium toruloides IFO0880

Name: 9197
Annotation: HMMPfam-Spc7 kinetochore protein-PF08317,SMART-Spc7 kinetochore protein-SM00787

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1307 PF08317: Spc7" amino acids 785 to 1117 (333 residues), 111.5 bits, see alignment E=2e-36

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1307 amino acids)

>mRNA_829 HMMPfam-Spc7 kinetochore protein-PF08317,SMART-Spc7 kinetochore protein-SM00787 (Rhodosporidium toruloides IFO0880)
MASDATALPARPQFKPAKSRASIAHLPSLNNTASTLSLSSESKENPATGATSSVDAGKRK
KRAQSLGGEALEEARKRLRDGKGEGGLTLAAGLELSPGKIERRNAQPRRSILKQRPSLHS
SDSLQGHHTISFPPPAPTTNAARVAAWSEAHAQTTDLSALSAFSAGGAGKKGRRSSLKPP
AAAESYDNSDASSSDQDEEEDPNGSLDMDMTRFETTAAYDTDGRRYSVSHTRRVSFAPSA
AVRMYTPDKPTADAQALAAAREAALAAALALQQIPSSSASASGSDEEELVDEGYEESEPS
MEIAGDEPTLAFARHFAGTQIPVSVLEEEEDADEPPTAATTAAGAQLQLFGTSAPTPGHP
KPRFSEVARREDEDDEDVMRQLGFARGGKPRPSRVGGVAFVEEEEGEEGESSMEQEGDGE
GGEDETGAMEMTVAIGGIVGTSAAAEDEQDDDDDDSSSESGDSEAEVSMQLTSGDRTMDM
TFATDIGAASERDEDEEMQDESAEVQDEEDATAAMVEATAYGSILPPQPPAPAPTTAAPP
PRTTLFAPRPSIARSPSPFASITRATSAPPASPPKSPFRHRSPPKSPGRALSVPLGDAAI
RSTTPTKSPFRQSIRERRMSSVSPGPPTRSPRRIISATASPAPQPHARRPVSPAKSAYPP
PSSLVAKSIPPQSPGITGRSRSRSRSRSASPVKQQQPNTPGRTVFQPRTLAPPMSAGRSP
GGSLSLRALLSQPAQAASNARVDELRAAEGAGTDDDLNLTGSSYDASFSSSAATAEEAAA
RLPDSLDAFLVATGTHFADDEFFEVVNSESTAAKRRKSMAATARTDEDEDDETKQMGGAK
AVEPTFADMTVAAAVKSLFHQLYKSEQGGLLEGINQARQMLEDSEQRLRSGVVPQVFKDW
ANATDEAKAIMKTQFGQIKLNYLLSNKLEWKTRRIQNYDQVVDIMAQNLQFIQQDRAVLT
EVQSQFEGVIPSLEARHAALLADLTAERSLDAELSLMSPEDVEMRENMLADSEEQEEQLN
GNPDKGIPGRRPELDRIEQHLRSYRETFEKYSTEEQHLQAEIADLEERRRDKRTKTDLVR
LQAEFEALQHLQGWRLEQFSTQHLALRHCDEFLVGFELIPGTLDVVAAIFEPLQLPRKAQ
SALSAQVTAFVLSKVNEEVQRVLADGREPKDARALLRYIASRACIIRHIRREVTLASLRY
PTSFRLVSHNGSQDDAVLEIDIDVFCAQSRQAFDVVVPLTAAEVLEAKAPEDWAKGISAS
VRARFGTDINALALAQTVNERLEGGDGRGALVEAVVLAEEECDQVAA