Protein Info for mRNA_831 in Rhodosporidium toruloides IFO0880

Name: 9199
Annotation: K12366 ELMO1, CED12 engulfment and cell motility protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 790 PF11841: DUF3361" amino acids 156 to 308 (153 residues), 48 bits, see alignment E=2.1e-16 PF04727: ELMO_CED12" amino acids 334 to 484 (151 residues), 74.8 bits, see alignment E=1.5e-24 PF16457: PH_12" amino acids 564 to 732 (169 residues), 103.8 bits, see alignment E=1.6e-33

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (790 amino acids)

>mRNA_831 K12366 ELMO1, CED12 engulfment and cell motility protein 1 (Rhodosporidium toruloides IFO0880)
MASPSQVHPPAAAPSASDFPVPPSSSLSSPPAPPAAPAPPSRPQLKAHYFHYSSRQVKAR
IDPEVPLEEIVKQLSASTQLGVKEPPGLFALREREGGELVTEENVREMLEKGTHFTLVSS
PMLEAVEMVDKLRSTDPSTLKPAVFTLRTLIRERLFLREFVKRGGVEAMQGVIKRSSGNT
LAYALVCLQGLLELDERGWEGIRRLFVARIVEIVTTEPLINVSRPATAILRRLASQPYTA
PNSPAGETGFSAVFDSIFDQPDFLAILVGKLSSGDVEVTNLSLGLLESLLRGSNELRDLR
IADALENLDAWKTVGKLLDQTKGADLSALLSLQRQLLLSLHVALTTPIDEPHYHLFDEVW
VAGELEDTDETNRWRRLGFRTEAPQYEFEGAGLLGLKALKRFAEDSQNEFAQTLRDQLKR
PEAQRLPLSTASTLVLRILASYFEITSPPSSPPPTPSPYLFRLYELHALVVQFFARMWAE
SGATNGEEEVERVAALTRGQVKFVLGGAGGEKSWFKVRQELLNADYKTVRDRQLRELAIE
DDLLSKAPVRNLRGRLYLESYEFVKAQRIACLHRGAWFLVSPSSTTAAGSGKKAMGKNGQ
QVWRFYRLAPNRKVLHWIDAVEKREIGPGLDELPEKIDVSSITEVVPTGGTTPQRPPASR
QGQSNGRTTGSKSRLSFLSKDSSSRTASPAPAPDTTASLSFTLHSHTGPLVELTAPSAST
FSEWVDGLSLLRPNGNIVTRATADYIQTLTDFGVKVKLLDLSGERIKIPAEVTADSVPDP
SARFYYADSF