Protein Info for mRNA_833 in Rhodosporidium toruloides IFO0880

Name: 9201
Annotation: HMMPfam-Homeobox domain-PF00046,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SMART-Homeodomain-SM00389,SUPERFAMILY--SSF46689

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 514 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF00046: Homeodomain" amino acids 441 to 494 (54 residues), 39.7 bits, see alignment 3.5e-14 PF05920: Homeobox_KN" amino acids 464 to 494 (31 residues), 29.4 bits, see alignment (E = 6.1e-11)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (514 amino acids)

>mRNA_833 HMMPfam-Homeobox domain-PF00046,ProSiteProfiles-'Homeobox' domain profile.-PS50071,SMART-Homeodomain-SM00389,SUPERFAMILY--SSF46689 (Rhodosporidium toruloides IFO0880)
MSRSSCSFMRRPSCVCCSRLNHVGAIVQQMRRSERRRPTPVPDRLAAPGAPRSLALTLSS
SLPRCFLALRRWLYAPSLDLATKRSTPSTSDDPRPSGLVRAHEPPSPTGLLPSFARGRML
PPPVPTASFDSDPRAYSSSSPQTNYTHLRPIHTATNGNGASFAKPRAPSPARSGAKLPSI
GASQSSSRLPAPSATNGRLSGSTASSKHGWNGSVSTSQAASSRGVPGPAPFARPPSPLRH
AHSFHSLPKTSHRTIPEPTTFARPASPASHRPAQPSHSTTRFQPPPLNVQASMASLRRKA
SQIELDSPTTASQPPSPAAPAHFSMTDRHRTPRSNQDGYRNLVRRASTSEFGAVKMELDE
DAGMMAAPHRPPSRSSTLPTASSSSGAPVNRGDYSILRRGYPAQVLSPHSVHHFFPPDDP
RIAPPADSEIRERDAQAAQPNKRTIFSPYELSVLQGLWAAGAYYPASHQVEEVQRRTGLS
RLQVRNWFANKRQRATGDEKLRVVEMGKGLSVAY