Protein Info for mRNA_837 in Rhodosporidium toruloides IFO0880

Name: 9205
Annotation: KOG2061 Uncharacterized MYND Zn-finger protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 520 PF04194: PDCD2_C" amino acids 340 to 515 (176 residues), 103.5 bits, see alignment E=7.5e-34

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (520 amino acids)

>mRNA_837 KOG2061 Uncharacterized MYND Zn-finger protein (Rhodosporidium toruloides IFO0880)
MPPPQASYLSRTSDKGYDPATLSDDESDSDSGSVTSRSTWTSSAAPGDETAILGLVDGLI
PEDRLDEELADWKISRVGGLPSFPLTHAPPLSSFHCLSCSTPMPLLLQLYCPLPTSTLER
VLYVFSCPRAQCRRKEGAVRVWRANGVWREGRVEEERREREEREREERRERAKNLDLGGL
VFASSSSGATPANSANPFNPFAPPTSAASSNPFVLPTSSSTASATASTATATAPASNPFA
STSNPFAAPAPPTPAVPVACPSTASPLAQTTSSWAFSSNSTHPSYPAQYLTTMYEPPSSS
SSSSKAKAKGKGKERELAKAMELGLRLDADDEGMDFDDEEQDGPRRAGKGSGGRVKKGAP
VSAGDKRKTGTTTGGGGEWQKEGYEVQKVKGVDEVFLRFQERVAREGRQVVRYEYGAEPL
SYTASSSAYRLLYPSSSSSPDSPGHYSPSRLPPCPSCRSPSTFEAQLMPHLVSLCPDQDW
ATVWVVSCAAECAGGIEGEGEEEERWREERALVEWEEEAV