Protein Info for mRNA_842 in Rhodosporidium toruloides IFO0880

Name: 9210
Annotation: K02148 ATPeV1C, ATP6C V-type H+-transporting ATPase subunit C

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 426 PF03223: V-ATPase_C" amino acids 9 to 414 (406 residues), 397.9 bits, see alignment E=3.1e-123

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (426 amino acids)

>mRNA_842 K02148 ATPeV1C, ATP6C V-type H+-transporting ATPase subunit C (Rhodosporidium toruloides IFO0880)
MAPSPNSLWLVSAPLESANPLEQLDELRQALGSGKLGSASLVEFPEFKTGTLSSLLTLSE
SLAKQDPSVTSALQKTVDTIRSLTAPPGSSGSSASATTSLPGFEDRASPLAQHLVLDDGR
PYISYILPDGTDRGQTEERWEWNRAKYRTEGRSLPEIVDALMKEVTSIENAQKNKTQQYG
VVKGQLATALRKKTGNLSMRSLADVVSASDFAGTNKSEYLETILVAVPKNLIKEWENSYE
RLTQMVVPRSATKLAQDDEFALFSVTLFRRVKDEFAQKAREKKFIVRDFTYDEEAIEKQR
RELENLLAEEKELWADLLRLSRINFSDLFQALVHLKVIRAYVESVLRYGLPAAYFGAIVA
PEPKQVDKLVKALSSFLVPSSRGKKGTKPKAGQDDSAALGEYASVMEGEYYEFVLFEIER
VEGRGE