Protein Info for mRNA_843 in Rhodosporidium toruloides IFO0880

Name: 9211
Annotation: KOG2262 Sexual differentiation process protein ISP4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 820 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 160 to 180 (21 residues), see Phobius details amino acids 187 to 203 (17 residues), see Phobius details amino acids 223 to 243 (21 residues), see Phobius details amino acids 255 to 279 (25 residues), see Phobius details amino acids 321 to 348 (28 residues), see Phobius details amino acids 364 to 381 (18 residues), see Phobius details amino acids 391 to 411 (21 residues), see Phobius details amino acids 463 to 487 (25 residues), see Phobius details amino acids 520 to 540 (21 residues), see Phobius details amino acids 547 to 570 (24 residues), see Phobius details amino acids 593 to 603 (11 residues), see Phobius details amino acids 629 to 648 (20 residues), see Phobius details amino acids 700 to 719 (20 residues), see Phobius details amino acids 747 to 765 (19 residues), see Phobius details amino acids 777 to 800 (24 residues), see Phobius details TIGR00727: small oligopeptide transporter, OPT family" amino acids 134 to 796 (663 residues), 462.1 bits, see alignment E=4.1e-142 TIGR00728: oligopeptide transporter, OPT superfamily" amino acids 141 to 797 (657 residues), 447 bits, see alignment E=1.4e-137 PF03169: OPT" amino acids 156 to 797 (642 residues), 474.2 bits, see alignment E=3.9e-146

Best Hits

KEGG orthology group: None (inferred from 47% identity to uma:UM04574.1)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (820 amino acids)

>mRNA_843 KOG2262 Sexual differentiation process protein ISP4 (Rhodosporidium toruloides IFO0880)
MSRRSQVVLRLLTSLSLCTAPRASMPSLGTVPASSSTDDLVTAGPAIPLVQLPHRSSDSP
RSSHDGTTDGAAESAGRRHDGRGKGLYGGRLDDGLDTEDEAKGRTSEEDEDDGEGRGLLN
DAEALFRKEDDGEADSAAAIVRKVVPETDDPSLPTLTPRVWILGTLLCVFGAAVSQLFFF
KSNAPSFSSFFIILIAHPLGKWMDRLLPDSLRRGAWDKKEHMLVGILAGSGASAAYAGEI
ISVQDLYYHSDLGNFGGLLLLLSTQLIGFGLSGLTYRFLVRPTQMLWPSQLVTVTLYETL
HGGKKDQRSSDSSQMRFFRRAFLAIFSWQFLPAVVFPGLSSIAILCILNNRSWIMRTLGS
GYNGFGWFVGSLDWSVVGQVGPLYTPWFAQCSYLAGTAINIWIVAPLLYFSNWWNAQDYD
SPLAAHLYNATAGRLNVHEILNADLSLNEARYAEVGPLRLTPYFALTYGVSFAVLTSVLT
SVALWHWDDIRAALSSRTGDSTDVHVEIVERNYLPVPSSHYAVIFGLNLLAAIVLLAFYP
QLQLPTWGLLLSLSLALVCLIPIGIISAITNTTIGLNVLTEFVAGFIWPGKPIANICFKV
YGYMCLLQSLDLTSDMKLGLYMHVPPRDLFVCQCYGTAVGSVVNFLLIRGVIAAKRPYLD
GSIADPTQQWDGRKPEIFYSASVIWGLIGPKRFFSGQYHVLYWGFLLGALLPLVPWYIYK
RTGKPFWKQISVPLVLHGAIAPPQTPMNVLIPGFIVSFLSQFWALRYHTRWFEKYAYVLS
SALDAGTSVQAIVIYILGISSFWEWWGNSSIDVEHCVPGS