Protein Info for mRNA_847 in Rhodosporidium toruloides IFO0880

Name: 9215
Annotation: HMMPfam-Amino acid permease-PF13520

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 797 transmembrane" amino acids 161 to 182 (22 residues), see Phobius details amino acids 186 to 207 (22 residues), see Phobius details amino acids 240 to 268 (29 residues), see Phobius details amino acids 280 to 298 (19 residues), see Phobius details amino acids 304 to 325 (22 residues), see Phobius details amino acids 353 to 371 (19 residues), see Phobius details amino acids 392 to 413 (22 residues), see Phobius details amino acids 433 to 462 (30 residues), see Phobius details amino acids 481 to 501 (21 residues), see Phobius details amino acids 512 to 534 (23 residues), see Phobius details amino acids 546 to 566 (21 residues), see Phobius details amino acids 572 to 591 (20 residues), see Phobius details PF13520: AA_permease_2" amino acids 166 to 586 (421 residues), 117.3 bits, see alignment E=4.1e-38

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (797 amino acids)

>mRNA_847 HMMPfam-Amino acid permease-PF13520 (Rhodosporidium toruloides IFO0880)
MAGLTSRLPTSTTRQHPLSPLDASSSAAQLEEEVVGTSTGLEGSGVGARRRRSRQNSGHA
PSYAESEYLEIVRRQNRSRSTTNSLKLPRQHTASSSYPSPSPDPDPASALATPSKDPPKL
SNEWEFSGWGHSSYVELTGEEVAHARREREQQMRRDGDGSLGSWLASGVAGVAVAGSPLY
AFPALVSVASIYSPVSLFVATLLLSFWRPIMTELAAALPISGANYAYLRVKTRLNTSTSV
SFALIGASLTLLDDIATSVVAAATASSYIAEQANHGVGEPWLTIVLLVGIAGISLVGMRG
SASVTLTTLTIHLLTLAILMLASVAHCARNGNSTLAANWHAGQVGSAGKIAKAIYQGICI
AFLGVTGFETAPDYCSSLRPASHIYPTVLRSLQLIAIVINAPLLLCTFAVLPLDEILGVP
SVLGALGRTSAGGWLSVLVTVDAVLILAATVLAGLVSAIALLHRLSHDGSLPRALLKPLP
LTGVPVLVVALFAALCIAVYASSGASLNVVSSMFAIVFLAVMSFYPVSLLLLQYHRPTLP
RLARRTPFILTISTLILAFALIAGVISNDPTSVGYFAAYMCVLTLALWTAARWGRWLRVV
WWVCEHGLGWERGADWCVRMMAKAKEGKEVVLFVKGDEINTLFERILYVQKNETTSMIKL
VHFYGPQSSTSATGQTEKVDNGEEAAVESSGGATVTVGQATDSTSPQDGRGDARADDLDD
IPSELTPNWRILDEAFPSITIDLVFLRAPFTPDYIHALAAHLQLSVSRMFMGCPSERWER
EKDFGVRELGGVRIISG