Protein Info for mRNA_860 in Rhodosporidium toruloides IFO0880

Name: 9228
Annotation: HMMPfam-PX domain-PF00787,HMMPfam-BAR domain-PF03114,ProSiteProfiles-PX domain profile.-PS50195,SMART-PhoX homologous domain, present in p47phox and p40phox.-SM00312,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF64268

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 603 PF00787: PX" amino acids 129 to 240 (112 residues), 76 bits, see alignment E=1.2e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (603 amino acids)

>mRNA_860 HMMPfam-PX domain-PF00787,HMMPfam-BAR domain-PF03114,ProSiteProfiles-PX domain profile.-PS50195,SMART-PhoX homologous domain, present in p47phox and p40phox.-SM00312,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF64268 (Rhodosporidium toruloides IFO0880)
MSDPSDNPFHEEALTDDPAPSSSSPPSHTTDPTSSSHLASSPPTSPGGFASRSDDDAPLF
SAPAAIAYPFSAEPYPQDTSGDRGGEGVTSPPLPQVPPGEGHEAQEEEEGKEKAQQQRVF
QRPARDAIQIVDALKTSEGASTPYIVYRIVFENREVRRRYSDFVSLRQALATLHPCFIVP
PLPPKNSLSSYAIAGANPAKAKEDAALIARRRRMLSTFLNRTLEHPVLGQERVFRRFLDP
ETPWHDVLHSPPVTLVPKNPLKAPANDPTNAEMLALFASLPIPSSSATLQHPDQRFLDSE
VFTSKFSSHLAGSMEKVNRRLMKRWTEAAGDWGEMGGGLNGFALRMGEDGSGGLDEATEK
VGMAVDAGYTLTNTMLKHWEQEFTEPLQEYTQFSNIIKSLLKYRHNKHLQYEAARELLES
KRGTLEELERSELEAQRLEKALERVRIVTEDGGSDRAVSPPSGSSPVGAAAESGAQAPLP
PLPSSSGSLAPQPAKRGGGLVSALKHSVKGLVDSDPESTRRSTISKTREQINQLDDAIKA
LTGDLRFASVTIQSDLDRFQRQKVGDIREMCLDFANFHKEWASKNLAMWEETKAAIDAIV
DDE