Protein Info for mRNA_870 in Rhodosporidium toruloides IFO0880

Name: 9238
Annotation: KOG0679 Actin-related protein - Arp4p/Act3p

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 558 transmembrane" amino acids 514 to 531 (18 residues), see Phobius details PF00022: Actin" amino acids 9 to 191 (183 residues), 41.7 bits, see alignment E=3.2e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (558 amino acids)

>mRNA_870 KOG0679 Actin-related protein - Arp4p/Act3p (Rhodosporidium toruloides IFO0880)
MVVRDDVILIFDLTSTLLRAGVGVHDLIRGPLVELPTRVGRMAGKAGTRVEDFLVGAQLA
AAEAVTAAGGVQDFDIIDPIRIVEKTGFEVTDWTALEAVFRYAMHTSMQLQRPPLAHPTV
LCIPPSLPQATVDDLHRLLFERLLIPQLLVSSRPFFAAGAAGVLSCVVIDVGYRGEGTEI
TAVHENQVLEAPSGMRNPFIDEGACDDYCALQLLEADPTIAEQFKAAKDADTELSTGELV
NGLRRIVLDLKVQDKIAFQSPFLSKEIAEAAALQAAAMGVEVADEGTFDVAKVVVEGKVG
EVVKNKGKGKDGEEEEGDFVRVPNPFHTAQPAAGQIDLTADSSPNATIRVGPARHRYLEP
LFFPSLLASLAPSASSTAAQLGMLQYERFATPEGKALLGQAGIHEMVGVVLSDVPEGDVR
TAVSEAVVVVSSGRVANNRSLGATLVPLLSPFRSDVSAAPYDPEAPPFNRATRYARTPDY
FANFKERAGDWACYLGGCIMGKVRSPFNFRFPRLGGWGLICLWVAAQLLLGDTQSKLFTT
KADYAMRGPSYYRRLDTI