Protein Info for mRNA_880 in Rhodosporidium toruloides IFO0880

Name: 9248
Annotation: K10632 BRAP BRCA1-associated protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 735 transmembrane" amino acids 225 to 246 (22 residues), see Phobius details PF07576: BRAP2" amino acids 220 to 311 (92 residues), 72.5 bits, see alignment E=2.8e-24 PF02148: zf-UBP" amino acids 399 to 458 (60 residues), 67.8 bits, see alignment 8.6e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (735 amino acids)

>mRNA_880 K10632 BRAP BRCA1-associated protein (Rhodosporidium toruloides IFO0880)
MPELLRRDSEDNRRYRVVIECYDHTSPRSINPLIPNTATRLPHTVDQELRAVQHRLVLPS
QGDLWRKRLPRTRTLDTRNPSTLSAGLSPSALPSPPLEPRSPPGPRIWSESFGLPSPPPI
ATAELWTPSRGDLPKTTHKPILDFRFGPLFCDSIDYPEPRGMTRHPGGKTSPSLAQTQPQ
PPRPAETSGTTELNWGIIHVYREAGAEESTYDEKRRANEEDDGRAVGLVSVPGVLNAAAL
LSFIAPALDDIEQVRMLRDSTPNRSLVLIRFRDAAKASEFKRVYNSKPYWDTKDSEICHV
VSISSVKLKSTSTPPFTFPTSSASFDNAPSDAVELPTCPVCLEILDSRVTGLVQTFCGHT
HHCNCLLKWGDSRCPVCRSTNARQRRNTVTATEAADSKCAVCQSPSNLWICVICGNVGCG
RYQGGHAHSHFTDTGHSFSLEVETGRIWSYLDDEYVHRLIRLRPSAASPGDRIIELPSIS
SSSAARSAPPPSEGDTEDLSAKIGSSYASQAGGPDRDAEVEQDKLEALALEYGNLMSSQL
ASQREWFEEEVAREKERVRVGEKVRKDLEGECEVLKRAVREREKEVKGLREAWDKEKRAL
EGRIEVLEREVRHEQDERKKERADLVKGKKQLERDLESERAVSASLTQNLAALRADFLEE
QKTTASVRGEVDDLKDQLNDLMAALSMRDRIEQEGPSSEWAGASIGVAPAPGTQQQQAPK
NPSAAKAAQRKKKKK