Protein Info for mRNA_885 in Rhodosporidium toruloides IFO0880

Name: 9253
Annotation: K10590 TRIP12 E3 ubiquitin-protein ligase TRIP12

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1582 PF00632: HECT" amino acids 1243 to 1582 (340 residues), 256.9 bits, see alignment E=1.6e-80

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1582 amino acids)

>mRNA_885 K10590 TRIP12 E3 ubiquitin-protein ligase TRIP12 (Rhodosporidium toruloides IFO0880)
MTMEEALAFGLDPAEAGIGGDIEENDVQMMLLACRCLANLMEALPGSAHSIVYAGAVPVL
CDKLKDIQYIDLAEQTLSTLEKISEEVPSTIVREGGLSALLTYIDFFSFHVQRTAVTAAA
NCCRNLTPDSFARVVEVMPIFKNILGYPDQRVVEQGCLAIVRIVDSYRHYPDKLEELLSN
DLLVAIKALLNPDSTTVGASTYAQMLKMLTTATKASPAVAISLVELEIANTLYHLLTGVA
PPEWKTDEGKQVLDRETTAEDDMLVMQNLVQRPKEQVAEVLNLVTELLPSLPKDGIFDSR
AFVPGKERKSAASKTVVKQEEQPVTVKREEETPDLNAAAGSSSTSKAAGASSDLAADVKM
EGSDDTPASALAGSSSAAAGLLSAPRLGRTSSSSTTRSGRKTRDPAKEALKAKRLELVSP
DAPTSRKLVFKRYVALLLPTLVDVYAATVSPQVRTRAVLGLLKMVNFCEEDHLADVLRNV
PFAAFISAILSSRENPAALITNALQLVELLLVKMHDAYQYTFRREGVMHEIARLADQPLV
SQKSKRSSPSRTPLNDGSASGAAAPSGLSRALQGAATKTALSPSDAQAQDSMVLRARHLR
DTYGAADTEPAVRAQGVLDRIKALVEHLNGVAHAEASGAKAIAKVEKEAREALDEIAELF
ADEKNPLSSFEMIESGLVEGLLKVATETGDGPLSPTKRQELIAKTFMPQLEGRASSPAFA
VLVKRLQESLSRIEEFEVVVAAQSGSDNDSRRGGTTMLSRQLRLRLVAEDGSDIPRSCTN
LVVSIHAIATFQAFNDYLRPKILAAQVASDRLSSGAAGELGGPADAAAGSSSAAGKAADA
SPSKPKRDEPKRRRSSRLSGKGVDPAPDAAESSNASAAQAEAKAALERAQALADEEEEAY
RRGNGDLYAGRLEGASAPKDDKPVHLEVNDEGENGGKLVAKTPDGTRVATPQPATKGSTS
TASPGSAPSSKPRASYAAALRAEPTDFHLEFTMGGRDVDLDTTVYGAVHRYESERPSGLG
GSMWYNVYEVKFRKVAGAARPDEDDANALGDRRRREGSIFTSMPSSIPNDSQQAKILQLL
HVLRSVSSEYGDFESDGLIKQTGLSDSAFVNSKLTAKLNRQLEEPMIVASACLPDWAVDL
AQSFPFLFPFDTRYTFLQSTSFGYARLMQKWVGQTRTDSNRRNDDLGMLGRLPRQKVRIS
RDRILESAYKVFELYGSSRASLEVEFFNEVGSGLGPTLEFYALVSKEFARKALGLWRAGD
HSDTSDYVHAKMGLFPVPLADVSTDAGKKALKIFHVLGQFVAKALMDSRIIDVNFSRAFM
RLVLEHDLPLNLASIKAVDPDLGKSLAHLQEYVAEKEAVEADDSKTAEQRTADLEAIQVR
GATVSDLTLDFTLPGFDLELKDGGKDIAVDIHNVEEYIDLVLDWTLRRGVQAQINEFKKG
FSTVFPVRDLQTFTPAELVMITAAVDEDWSLETLTNATKADHGFTMDSRPVREFLAHMAG
LTVEERREFLSFMTGSPRLPIGGFAALDPPLTIVRKDGGDAVLPSVMSCVNYVKLPDYSS
REVLKERILLAVREGAGGFHLS