Protein Info for mRNA_894 in Rhodosporidium toruloides IFO0880
Name: 9262
Annotation: K01694 TRP tryptophan synthase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K01694, tryptophan synthase [EC: 4.2.1.20] (inferred from 65% identity to mgl:MGL_0012)Predicted SEED Role
"Tryptophan synthase beta chain (EC 4.2.1.20)" in subsystem Auxin biosynthesis or Tryptophan synthesis (EC 4.2.1.20)
MetaCyc Pathways
- superpathway of aromatic amino acid biosynthesis (16/18 steps found)
- superpathway of L-tryptophan biosynthesis (12/13 steps found)
- L-tryptophan biosynthesis (5/6 steps found)
- DIBOA-glucoside biosynthesis (1/6 steps found)
- superpathway of benzoxazinoid glucosides biosynthesis (1/13 steps found)
- superpathway of chorismate metabolism (28/59 steps found)
KEGG Metabolic Maps
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of phenylpropanoids
- Biosynthesis of plant hormones
- Glycine, serine and threonine metabolism
- Phenylalanine, tyrosine and tryptophan biosynthesis
Isozymes
No predicted isozymesUse Curated BLAST to search for 4.2.1.20
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (704 amino acids)
>mRNA_894 K01694 TRP tryptophan synthase (Rhodosporidium toruloides IFO0880) MSQHLRDTFAAKEDSNSPAFVTFLTAGFPTVDATVPLMLAMERGGADIIELGVPFTDPLA DGKAIQECNNIALDQGVDYTRCLEFVKEARSQGLKTPVILMGYFNPLLAHGEEKAVQDAK SAGANGFIIVDLPPEEAVNFRKICTREGMSYVPLIAPSTSTERIKFLASIADSFIYVVSK MGTTGASDKVSSSLSAMLSRIRGLLNRPIPLAVGFGVSTREHFEEVGRDADGVVIGSQLV AIIKDSFQLGQAAAVSAVEAYCQQVSGNRTRAAPLPKRAVSADDKAKEIASVEEKVAKAA RFGDFGGAYVPEALYDALEELTTAYADARADPEFWKEWEGEFGYINRPSQLYEARRLTEH CGGAKIWFKREDLNHTGSHKINNAIGQILIARRLGKTRIIAETGAGQHGVATATACAKFG LECVVYMGEEDVRRQSLNVFRMRMLGAKVVAVASGTKTLKDAINEAMRDWVTNLSSTHYL VGSAIGPAPFPTIVRDFQSVIGTEIKEQLKAATGRLPDAVVACVGGGSNAIGTFHPFIND TSVRIVGVEAAGEGVDTERHSATISRGTKGVFHGVRTYILQTKVGQILGTHSISAGLDYP GVGPEHAWLHETKRGEYISATDEEALRGFRACTQMEGIIPALETSHAVWATMQLAKTMPK EANIVMTLSGRGDKDVQEISEILPGKWADKLDWHIDSNANTVQG