Protein Info for mRNA_904 in Rhodosporidium toruloides IFO0880

Name: 9272
Annotation: K04705 STAM signal transducing adaptor molecule

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 722 PF00790: VHS" amino acids 7 to 142 (136 residues), 103.7 bits, see alignment E=2e-33 PF07653: SH3_2" amino acids 217 to 268 (52 residues), 53.3 bits, see alignment 4.5e-18 PF14604: SH3_9" amino acids 219 to 266 (48 residues), 50.4 bits, see alignment 4.1e-17 PF00018: SH3_1" amino acids 219 to 262 (44 residues), 57.8 bits, see alignment 1.7e-19 PF03127: GAT" amino acids 309 to 374 (66 residues), 36.4 bits, see alignment E=1.4e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (722 amino acids)

>mRNA_904 K04705 STAM signal transducing adaptor molecule (Rhodosporidium toruloides IFO0880)
MFGRAVNPYDEIIAKATDEKQTEINWEIALTVWDKVNEDGETGARNCISALQKRLTHRSA
NVQLFSLTLAGALVSNCGPPLHREISGKAFTSSLVRLINDRTTHETVKKEALKQIETWVK
EHPGNGDFDLLVETYEQLKRQGHNFGDERPPTPKGPSDDLLRREEEELQRALAESAALAD
PLRNFQRSGSGPDPSALPSASKALPAQPQPALPSHVRGLYDFEGETSDELAFKRGEVVKV
LEKVSEEWWRGELRGRVGIFPTNYVEEIPATAVPASYPPSSNPAAQPVPSAGSDMEAEIF
AQAAAVDRLLALMHTLRARGEDFADNDELTDLYNSSMALRPKVVQLIRKYEQKQAELQAM
NDKVNRAKATYEQLAGLQPTQQHQPQQHHPQQYPSQHVQPNGYPQAGPPQQAYTAPVQQP
PTAQPADPYARSSYPPASQGPPPGAGEQLSAEEEEQRREYEQKWAEYERQMEEYNRAMAA
LQQAQAGGAVPPPQDAHGQQPQPQPQQQAHTGQEQPQPVWDAQAGQWVWPQLQAHVAAPP
PPVGQDGQAYPPQSPGHAPSQVPPPALSPALSVSQQAGYPAQTQPYPAGHASSPPPPVQQ
HPPPHQLHEQMANLSVAAASPPPQAGYPAHQPPYGAPPQQATSPPPPALAAQHAPPPQHY
GQPPAMISPSLAAAQSPAPYQQQVYPADPYGQQQQHGQAQHDPAWAAWHAQQQQPQGMVP
PQ